Protein Info for ABI39_RS10410 in Phocaeicola dorei CL03T12C01

Annotation: FAD-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 547 PF03486: HI0933_like" amino acids 84 to 248 (165 residues), 29.1 bits, see alignment E=1.5e-10 PF00890: FAD_binding_2" amino acids 85 to 118 (34 residues), 22.3 bits, see alignment (E = 2.4e-08) PF21688: FAD-depend_C" amino acids 269 to 381 (113 residues), 143.8 bits, see alignment E=2.9e-45 amino acids 392 to 490 (99 residues), 81.4 bits, see alignment E=3.8e-26

Best Hits

KEGG orthology group: K07137, (no description) (inferred from 94% identity to bvu:BVU_2047)

Predicted SEED Role

"NAD-utilizing dehydrogenases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (547 amino acids)

>ABI39_RS10410 FAD-binding protein (Phocaeicola dorei CL03T12C01)
MIQEFQIRVLPEQAANEQSLKQFIGRDKGLDIRTIHALRILKRSIDARQRTIYVNLKVRL
YINEVPQDEEFIRTIYNKVEGKPQVIVVGAGPGGLFAALRLIELGLRPVVVERGKNVRDR
KIDIARISREHKVDSESNYSFGEGGAGAYSDGKLYTRSKKRGNVDKILNVFCQHGASTSI
LVDAHPHIGTDKLPRVIENMRNTIIECGGEVHFETRMDSLIIEKNKITGIETNTGKTFKG
PVILATGHSARDVYQWLYDNGVEMEAKGIAVGVRLEHPSMLIDQIQYHNKNGRGKYLPAA
EYSFVTQAEGRGVYSFCMCPGGFVVPAASGPHQIVVNGMSPSNRGSKWSNSGMVVEIRPE
DLSDNSLFTEELKTKSEELKATNKNNGQWTTGHCPLTMMYFQEALEATCWQQGNMRQTAP
SQRMMDFTRKKLSYDLPDSSYSPGLVSSPLHFWMPTFITSRLIKGFQQFGKSSHGFLTNE
AAMIGVETRTSAPVRILRDNETLQHVTINGLFPCGEGAGYAGGIVSAGIDGERCAEAVAT
YLGIEED