Protein Info for ABI39_RS09665 in Phocaeicola dorei CL03T12C01

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 965 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 27 to 108 (82 residues), 47.6 bits, see alignment E=2.8e-16 PF13715: CarbopepD_reg_2" amino acids 28 to 120 (93 residues), 45.2 bits, see alignment E=1.2e-15 PF14905: OMP_b-brl_3" amino acids 452 to 775 (324 residues), 84.8 bits, see alignment E=1e-27 amino acids 790 to 919 (130 residues), 31 bits, see alignment E=2.2e-11

Best Hits

KEGG orthology group: None (inferred from 97% identity to bvu:BVU_1902)

Predicted SEED Role

"FIG00897756: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (965 amino acids)

>ABI39_RS09665 TonB-dependent receptor (Phocaeicola dorei CL03T12C01)
MKKLILLLLLVCTCATLSWAQSGKRITVTGSVIDGDDKSPVGQATVQLLSLPDSTMVVGN
VTNNNGVFSIAARPGKYVLKISFVGYLTQEKSLQLTAGKPSVNIGTVTLPTDAIMLGEAV
IVAEAPQVTISEDTIGYNASAYRTPEGAMLEELVKKLPGAEIDDDGNIKINGKEVKKIMV
DGKEFFGGDVKTGLKNLPVDMVEKLKTYDKKSDLARITGIDDGEEETVLDLTVKKGMNQG
WFGNVDLAAGTEDRYAGRAMINRFYDKTQFSIIGSANNVNDQGFSGGGPRWRRNNGLNAT
KMLGANFATETEKMEVGGSMRYNYRDADVVTVGSSQRFLQSGDSYSNSNKADRNKVTDFN
ADFRMEWRPDSMTNIIFRPNVSYNKTKGTSATESGTFNEDPYQYVVNPNDYLNFNNIGTD
DPLRDTRINATNEHNLSKSNSLSANATLQLNRKLNDKGRNITFRGSFGYGDDDSDQYAQS
ETRYYQIKNYLGGDSIEYRNQYITMPTKNYNYTAQFTYSEPIARATFLQFSYRFQYKNSK
SDKSTYDLGYPWNINDGLPEDYETAYVDSLSKDAEYKYFNHDISLGLRFIREKYQLSAGM
SLQPQNTKLSYKKGDYMTDTTRTVFNFAPNLDFRYRFSKVSQLRITYRGRSSQPSMENLL
PIVDNSNPLNIRVGNPGLKPSFAHTMRLFYNTYNAEKQRGIMTHVNFTATQNSISNSTIY
DENTGGTTSTPQNINGNWNAFGMFGFNSALKNKKFTINSFSRVNYRNQVAFLYNKETLHD
DKNTTTGLTLAENLNGSYRNDWFEFSLNGSIEYTAERSKLRPEKNQNPYTFSYGASTNVT
LPWQMTLSTNITNQSRRGYDDASLNNNELIWNAQIAQSLLKGAATVSFEMYDILKQQSNI
SRSLTADVRSVTEYNSINSYCMVHFIYRLNIFGSKAARDKMMNSHRGFGGPGFGPGPGRH
GRRPF