Protein Info for ABI39_RS09310 in Phocaeicola dorei CL03T12C01

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 963 TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 1 to 963 (963 residues), 754.8 bits, see alignment E=1.9e-230 PF07715: Plug" amino acids 36 to 144 (109 residues), 77.9 bits, see alignment E=4e-26 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 120 to 150 (31 residues), 64.8 bits, see alignment (E = 4.4e-22)

Best Hits

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_1852)

Predicted SEED Role

"SusC, outer membrane protein involved in starch binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (963 amino acids)

>ABI39_RS09310 TonB-dependent receptor (Phocaeicola dorei CL03T12C01)
MATQEVAIRQTVNITLKSDTEMLDDVVVVAYGTAKKSSFTGSATAVSGEKIAKMQVSSVS
KALEGAAAGVQVINTSGQPGENAKIRIRGIGSFSASSAPLYVVDGMPYDEESVNALNPAD
IESMSILKDAASASLYGSRAANGVVMITTKKGMVDKSKVTLDARWGVNTRGVPEYDIMKD
QREYVLTAWNTLKNQSTGAEASEGLIGSIGYNPFIGVANNAMVSADGVVSSAALRHNDDW
ADAALHNGMRQEYNLSLQGGNAKTTHFLSLGYLKDEGILRHTDFERISARANINHTVNKF
IDINGNLAYARAEKNAGQSQNASLSNYSNAFMFTQQIAPIYPVYAYDENGNRIYDEEGNT
VYDFGDGTYSTRMGGFSNQNVAANSGLDVHQTLNDNFNGRGTININIIDGLKATANIGYD
LMNQIRTDHMNQLYGDAANVNGRTYKYNQRIESFTANQLLTYSKAFGHHNIDIMAGHESY
SYTLKYQYTHKYNFYTIGNPEFNNAITMSDMNSYTQEHSMESFFGRVNYDFDNKYYLSAS
IRSDESSKFHPDHRRGTFWSVGGSWRLTQEEFLKDVEWLSNLKLKASYGTQGNDGILDIN
GYVVYQPYLKQYSVTNNNGDFSVVETYRGNKDLTWEKSKNLNIGLEAAFLNNRLKLETEY
FLKKTSDMLYNMPYPISSGISYVPMNLLDMQNKGIEFTISATPIQTKDFIWNLSFNGTHY
SNKILNLPEDKRENGIIHGTASLFRLMEGGSIYDLYTYEYAGVNPETGAAQWYMDEKDAN
GKVTGRTVTEDYTQASKYELGSTLPDFQGGFSTDFAYKGIDLSIATNFQIGGKIYDSMYS
SFMHAGSNIGSNWHKDILNAWTPENKNTNVPIMDGAQNSNSQSSRFLINASFFNIRNISL
GYTFPKEWMKAISASSARIYVSADNVALFSKRKGMDPRQYAYGYSAANYSAIRTLSFGIN
LNF