Protein Info for ABI39_RS08295 in Phocaeicola dorei CL03T12C01

Annotation: DUF3332 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 183 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 48 to 69 (22 residues), see Phobius details PF11810: DUF3332" amino acids 6 to 168 (163 residues), 217 bits, see alignment E=7e-69

Best Hits

KEGG orthology group: None (inferred from 96% identity to bvu:BVU_1677)

Predicted SEED Role

"FIG00403513: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (183 amino acids)

>ABI39_RS08295 DUF3332 domain-containing protein (Phocaeicola dorei CL03T12C01)
MKKSKTFLVCATLSGSVLFSSCIGSFGLWNSLKDWNQGVSNKFVNELIFLAFHIVPVYEI
AYLADVLVLNSIEFWSGSNPTASIGEVKTVQGENGEYLVKTNENGYTITKKGEDKSVGLV
YNKENNTWNAVSGEQSFELVKMNEDGTATLSLQNGTSMTVTPDAQGIATARIAIGNSLFF
AAR