Protein Info for ABI39_RS08005 in Phocaeicola dorei CL03T12C01

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 471 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF13432: TPR_16" amino acids 40 to 90 (51 residues), 15.8 bits, see alignment 9.2e-06 amino acids 67 to 121 (55 residues), 24.1 bits, see alignment 2.4e-08 PF13181: TPR_8" amino acids 64 to 93 (30 residues), 15.1 bits, see alignment (E = 1.2e-05) amino acids 97 to 127 (31 residues), 20.5 bits, see alignment (E = 2.2e-07) amino acids 168 to 190 (23 residues), 14.3 bits, see alignment (E = 2.2e-05) amino acids 274 to 300 (27 residues), 11.9 bits, see alignment (E = 0.00013) PF13176: TPR_7" amino acids 64 to 88 (25 residues), 14.6 bits, see alignment (E = 1.7e-05)

Best Hits

KEGG orthology group: None (inferred from 93% identity to bvu:BVU_1620)

Predicted SEED Role

"Tetratricopeptide repeat family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (471 amino acids)

>ABI39_RS08005 tetratricopeptide repeat protein (Phocaeicola dorei CL03T12C01)
MKKLVLIVMSLCLAVTMWGQKSPGSEWSLQVKQAATMIKEDPAKASEAFDELLKGKNKKN
AFLLVEIGRAYLDQGKTAEAAEYAQRAKDINSKCAVAYLLSGDIALNLNDVNKASSDYNQ
AIYLDEDCSEAYFKYAQVYKGVDPQLSLDMLMRLQSKTPEDNRISKELADVYYTMGQYGK
AKEAYENYLKVGTPTEQDYTRYAMLLYLNKDYAQSLDMVKKGLELAPENHVLKRLAMYDY
LELKDYKTGLEAAATFFANPGNPDYVYLDYVYFARLLEADKQYEEAVVQFNKALSMDKSH
TEIYKDISDVYEKKRDFPKAIEAYKNYLDEMKSSPDISDLFLYGRLNYYAATDSAYQDKQ
PTYLAEADTIFAQVAVKVPDNYLGNFWRARVNSLRDPETTQGLAKPYYEAALSILEQKPD
ATKSVLVECNSYLGYYYFVKEDYNQSKQYWNKILEIDPENETATKALGGIK