Protein Info for ABI39_RS07885 in Phocaeicola dorei CL03T12C01

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 906 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF16378: DUF4988" amino acids 27 to 150 (124 residues), 43.3 bits, see alignment E=1.6e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (906 amino acids)

>ABI39_RS07885 hypothetical protein (Phocaeicola dorei CL03T12C01)
MNKKFLSAVLFGALMVSSTGTFVSCKDYDDDIDRIDNTLNDLKSQIAALQTEVANGNWVT
SVTPTEGGFTVVFKDGKTYTIVNGKDGEKGDKGEDGKGTEVAVKDGYWYIDGEKTDYLAV
TSEDLKEVKVPYISEEDGYWYFYNDKGEAEKSPYKAIGAAYAVNAGGVFTLYMPDANGVM
QTIKLPTAASLISGINILDGSTKPTTQDQALSIKYWVHSNASADWAGPRGKIAAKSILYS
AKAGDADICFNLDPSNVDATEMSFALINSQDGVAPLELVSPADYKELITRRSATYNNGIF
TTGIGEGSKIFTYSNDESDFTSQLLKTSGNVIFALTPNVDGANVRSPYQIKVNTTKNPSA
TLTHIIITGVDNNANSYDWSSSLSTSGGSATIKVGVEAPVTAKEPYNLYDLYMTVTDAAK
DKFGLLIDNEKRTIIATKSPDDLTDATFDLTVKVMDNAGQQYSKVVTVTVNRTMGESAYD
KQEKPLTKLTDTFAVPAEPLFTSLAGKANDWKESVDLSKTKFELLQKNSAGDLVAATEGN
SSFYGILDVANTVAPNGQANGHVAFLTSDNKIATPATLANIRFSFNIPTATVNAPVKIGK
EYYIRLTFKSKEASSVVLNTITVPFELSKPELNSILVKESGVFVDGNNLAHAYMNAVDAK
WATGIISSTSRYYIDRAFTNMYENLKKVGDYSFDIVTNDDPSKPSSYYAVTNTVVKTATV
QPDYAVRSYVELKNVDDNGDGIKDGYKRDLNVKFTGHYLAVQDDSYKYGETYQFRVMSPI
LEGEAMAANNVVEVSATGKTKIYREDIWAKTYNNDVKYDIFKNNSSWSRADIATVKFATG
NVNVFQMVVDTPTNQVITGGKVTTDSYIEVEGVSENTAKLKVAITDIWNYTLNSSVDIKT
TLNTGK