Protein Info for ABI39_RS07810 in Phocaeicola dorei CL03T12C01

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 824 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00593: TonB_dep_Rec" amino acids 341 to 713 (373 residues), 70.6 bits, see alignment E=2.5e-23 PF14905: OMP_b-brl_3" amino acids 385 to 787 (403 residues), 346.4 bits, see alignment E=2.6e-107

Best Hits

KEGG orthology group: None (inferred from 98% identity to bvu:BVU_1487)

Predicted SEED Role

"putative TonB-dependent receptor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (824 amino acids)

>ABI39_RS07810 TonB-dependent receptor (Phocaeicola dorei CL03T12C01)
MKHNILWGIILLVASLSFTAKAQKVVQGQFSVKGILLDSLSNEGEPYSTIRISLKNNPAK
PVKLAVTGADGRFDERLAVPGTYLIHFTSVGKSPVQKEFSISTNRKNVDLGKILIAEATE
MLKGVEVVAQKPLVKAEIDKVTYSIEDDPDSKTNTTLEMLRKVPLVTVDGEDKIQVNGSS
KFKVHVNGKPNNMMSNNPTEVLRSMPANSIKSIEVITEPGAKYDAEGVAGILNIITIGAG
MEGYTVTLNGGASNTRVYGGGYGTVQSGKFTVTGNYSYNYQGSQKGFEDSYREDFTSQEN
KFLESHRRSKSYGNFQFGSLEGSYEIDTLNLISFSMNLMTGNFTNKRIGNTHMTNYAGNP
VYGYGSLGNNESGFGEVGGNMDYQHSFKKKGELLTFSYRFSHSPNNSEANTDYEDTLNVP
YLLQNQYFKNDASTQEHTAQLDYTNPINSIHSIETGIKYIFRRSKSDGKYYLADKTGEYK
YDQDMSTQYDHKQDILAAYLGYQMKYKKLGGKAGIRYEHTFMDADYKNKDEKFDAQFDDL
VPSLMFSYQLAPTQSLRASYNMRISRPGIWFLNPFTDTSNPTAISYGNPDLESEKAHSLS
VTFGSFSQKFNVNVSANYSFVNNGIEQYSFIKDGVMNSTYDNIGKSKNINLSLFLNWNMS
PKTRFNINGRGAYVDYRSSGLDLKNHGWEGNLFGSFQQTLPWDLRLSLNGGGGTPHISLQ
GKSSSFYYYAIGFSRSFLKEKRLTISLNSSNLFNKYITFKNNINTSTFCSSTSTRIPMRY
YGFNISWRFGELKAQVKKAARSINNDDLKSGGGNAGTGGGIPAN