Protein Info for ABI39_RS07670 in Phocaeicola dorei CL03T12C01

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1127 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 40 to 1127 (1088 residues), 816.6 bits, see alignment E=4.2e-249 PF13715: CarbopepD_reg_2" amino acids 41 to 122 (82 residues), 69.9 bits, see alignment 2.3e-23 PF13620: CarboxypepD_reg" amino acids 41 to 98 (58 residues), 42.7 bits, see alignment 9e-15 PF07715: Plug" amino acids 130 to 237 (108 residues), 79 bits, see alignment E=5.5e-26 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 213 to 243 (31 residues), 69.2 bits, see alignment (E = 2e-23)

Best Hits

Predicted SEED Role

"SusC, outer membrane protein involved in starch binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1127 amino acids)

>ABI39_RS07670 TonB-dependent receptor (Phocaeicola dorei CL03T12C01)
MKNKKKIVLRCLAMRKSFQKSFFIIFFFAWAIGTLAQIKVVKGVVLDTQGEPVIGASVVV
KGVPNGVITDFDGKFSIQNIPDDATIQISFVGYKTQDILVKGKNYFNITLQEDAEMLEEV
VVIGYGSVKKSDVTGALTQVSEKQIKERPVQNALQAMQGKAPGVDITTNSRPGEVGEVRI
RGNRSITADNDPLYVIDGIPMVAGSINDINPNDIESMEILKDASATAIYGSRGANGVVLI
TTKNGKVGKVSISYDGTVTFSKIHSMTDWMDSGELIDWNRQAYINAGAYTGAYGTAPDPN
TDGDLLFGGISRYPYLKPYFKQAWEYNADGSYKMRPATAEEIKAGYATEVPVYNSKNIPT
TPWTDYVTRTAVTHNHQISLSAGTEKSKLYMSLAYLDQESPMRDQDFKRYTAKINGEIQV
AKFLKVGMGINASHSIKNYGIINNGSGSGYKDSYGYALDKLPYAPAYDEEGIPLNVSDGP
SHYNPMLDVTEAINETRYYSVMFNSYGEIDLGKIWSPLEGFTWRTNFGTQYRNSRYGSYY
GNNFSNPLGHSAYAANTAYNDHDQHLSWTLENLLYYNKTFNKIHSVGLTLMQSAEYSRSE
GLEVRAFNCTFPTALWYSVGNSDLTRDTPGSSFSTQSRASYMARFNYSLMNRYLLTATGR
WDGASMLAVGNKWDFFPSVALAWKMNEENFLKGLDWIDQLKVRVGYGVTGNASIKPYQTT
GSMTTNGSGKYIGMGNISNVTIGAKASVLPNKDLGWEKTATTNIGLDFGFLNNRISGSLE
YYVANTSDLLLNKALPYMSGYTNILTNVGKTRNRGFELTLSTINIKTRDFTWKTDFTFST
NKEEIMELANGKVDDIANKWFIGKPINDVWVYKYDRLWQNSNDDLRQLAIYGANSITMLP
GMAKLVDQPLIEVPQGTEGAITKDIEYRDINGKNIRETVTYLDNGYGKFDDNDKQHIGSF
SPKWIGGFTTTFIYKNWQLNSFIYARMGSTYYGLLQTYGRRVEKDVWSPENPSGKFPIQR
TGGITTNDYSNYMGFTKGNMVAIRNIALSYSFPEKWLNKMGVTNFQIYTQVLNPFIFGGE
LVKAGINPDDTTGWNTTANNNDTGFIGGQTNNTILTRSYVIGLRIGF