Protein Info for ABI39_RS05930 in Phocaeicola dorei CL03T12C01

Annotation: S9 family peptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 747 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF00930: DPPIV_N" amino acids 150 to 454 (305 residues), 180.4 bits, see alignment E=1.3e-56 PF07676: PD40" amino acids 164 to 177 (14 residues), 13 bits, see alignment (E = 2.4e-05) PF00756: Esterase" amino acids 502 to 737 (236 residues), 23.7 bits, see alignment E=1.1e-08 PF00326: Peptidase_S9" amino acids 541 to 735 (195 residues), 142.6 bits, see alignment E=3.7e-45 PF02129: Peptidase_S15" amino acids 542 to 648 (107 residues), 24.2 bits, see alignment E=7.8e-09 PF01738: DLH" amino acids 566 to 717 (152 residues), 24.7 bits, see alignment E=4.8e-09

Best Hits

KEGG orthology group: None (inferred from 98% identity to bvu:BVU_1121)

Predicted SEED Role

"Dipeptidyl peptidase IV in 4-hydroxyproline catabolic gene cluster" in subsystem Proline, 4-hydroxyproline uptake and utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (747 amino acids)

>ABI39_RS05930 S9 family peptidase (Phocaeicola dorei CL03T12C01)
MKVGKLGWLVAMFLSGGMAIAQGTADDYRRAYALKEKFSADKVFYSNVNPQWIEGTHQFW
YVRNTPDGRLYVSVDADKKARKELFDSHRLAKALGAASGKEVKPEALALGHLSVSKGLDT
LHFVFNNQRWMYASRKNQLVNEGALPLPPKQKHWMEVDDEKTASPIPSPDGKWIAFIKNQ
NIYVKEVATGKEKQLSLDGTLGNYYSAYIRWSPDSKKVASCKIRPVEKRYVYYVESSPAD
QLQPKLHKQEYAKPGDELPFKVPCIYEVESGRSIIPSTELFDRQYEVYGPEWNPDSRAVT
FEYNQRGHQVYRVLELSAETGKVRPLVEETSDKYVNYTRHFRHDLKDGKQMIWMSERDNW
NHLYMYNRITAQPDYQITKGEWYVREVLRVDEDNRQIYFSANGMEAGEDPYLIRYYRIGF
DGKGLTCLTPEEGMHRAWFSEDMKYLVDVYSMVNKAPVAVLRSARDGKVMMPLETADITR
LEAEGWNAPEVFVAKGRDGKTDMWGLIARPTNFDPNKKYPVIEYIYQGPGDQYVPKTFRP
YDWNMTSLAELGFIVVMVDGMGTSFRSRAFENVCYKNLKDAGLPDHIAWIKAAARKYPYM
DVDRVGIYGCSAGGQESTNAVLLYPDFYKAAYSACGCHDNRMDKIWWNELWLGYPVGDQY
KEGSNVENAHLLSRPLMLVVGELDDNVDPASTMQVVNALIKANKDFELVVIPGAHHTMGE
AFGEHKRYDFFVRHLMQVNPPKWDEIK