Protein Info for ABI39_RS05690 in Phocaeicola dorei CL03T12C01

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1175 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF07660: STN" amino acids 62 to 112 (51 residues), 35 bits, see alignment (E = 2.4e-12) PF13620: CarboxypepD_reg" amino acids 121 to 190 (70 residues), 38 bits, see alignment 4.4e-13 TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 121 to 1175 (1055 residues), 890 bits, see alignment E=2.7e-271 PF13715: CarbopepD_reg_2" amino acids 121 to 202 (82 residues), 68.7 bits, see alignment 8.9e-23 PF07715: Plug" amino acids 211 to 325 (115 residues), 58.6 bits, see alignment E=2.1e-19 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 301 to 331 (31 residues), 56 bits, see alignment (E = 2.5e-19) PF00593: TonB_dep_Rec" amino acids 562 to 955 (394 residues), 70 bits, see alignment E=9.8e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_1157)

Predicted SEED Role

"TonB family protein / TonB-dependent receptor" in subsystem Iron acquisition in Vibrio or Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1175 amino acids)

>ABI39_RS05690 TonB-dependent receptor (Phocaeicola dorei CL03T12C01)
MKKNFCKVRRGHCLSLVWIVSFLLWGNVTMAALPIQEAKLSIQQRSVALSRVFYEIEKQT
GYSFLVRNNDINMNEKVSIDVKNKSVEEVLEMLFVGKNIRYKVEGEHISVYKPQQSRQNA
ITGLVMDVAKEPVIGASVVVMGSTNGCITDFDGKFSLEVSEFPVKLQISYIGYKSQEVTV
RDTKTIQVVLREDTETLDEVVVVGYGSQKKANLTGAVASVKMDEVIGNRPLSQAADALQG
TVPGLFVSSDGNAPGKSKSFQIRGAYSVGIKNDDGSYGSAIKPLILIDNVEGDLDMVNPE
DIETVTVLKDAASAAIYGARAAGGVILVTTKRPKGETSFQLNYNNNFAFATAMNLPEQAP
LMEYLQAYSDAAGDQFWTMGSPSVSKWMGYLEQYRNNPSSIPTVGDGIFKDTDGAVYYMN
EKDLVKNMLETSFQHTHNISMTGGTDKLRYRLSAGFIDNDGVLITDKDKYRRMNVSGFIS
ANVTKWFTQEATFSYAHSKRMEPKSALGAVYSTRLASFYPEGNMPEGISVAGDGLPFFTP
SNQIRWSNPEKTLYDNPRIFLKSILKPLKGFEIAFEYTFDKNIYDYSWYTGSVVYTTVQG
GKDTTPTNDYLQKKKRYTDYNSINLYGTYDFSLGNHQFKIMAGFNQESSYQETMEALSYG
QAVIEVPSLGSGTSTLKATDKYNEFSVRGGFFRVNYNYQDKYLLEVNGRYDGSSKFPKES
RYGFFPSVSAGWNIAQEKFMESTQNWLGSLKLRASYGMIGNQNVPAYSFIPTMAVNNKYN
GWISNGNYVTAITSIPSLVSRNFTWEKVGTLDIGIDFSMFSNRFTGTFDWYQRNTNGMLA
PGVQLPAVVGADAPYQNTADMRTRGWELSFNWRDQIGKVSYRVGFNLSDSKSKIVKYDSN
SSYILSSQKTNALTGGTYTFWEFYKGKELGEIWGYETDGYYTVDDFVDTSSWKLKDGVPS
IDGYNPRPGDVKFKNLMDDERGTNMISSGNNTLNNPGDRKVIGNETPRYLYGINLGLNYK
GFDLSAFLQGTGKRDKWIANTLTFPLYSDFKFIPLYKGLGDYWQPVDAANGDYTAVNPNA
EFPRIYGNYGNQGSNYRQSDKYLSDASYLRIKNVTLSYTFPKAWITKISLSQLRAFVSVE
NLATFSSLPKGIDPETLKWDYPAFRTVSFGLNLTL