Protein Info for ABI39_RS05130 in Phocaeicola dorei CL03T12C01

Annotation: response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1297 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 743 to 762 (20 residues), see Phobius details PF07494: Reg_prop" amino acids 39 to 57 (19 residues), 18.5 bits, see alignment (E = 7.6e-07) PF07495: Y_Y_Y" amino acids 683 to 737 (55 residues), 36.5 bits, see alignment (E = 1.6e-12) PF02518: HATPase_c" amino acids 898 to 1004 (107 residues), 80 bits, see alignment E=7.9e-26 PF00072: Response_reg" amino acids 1044 to 1153 (110 residues), 77.9 bits, see alignment E=3e-25 PF12833: HTH_18" amino acids 1211 to 1289 (79 residues), 70.2 bits, see alignment 6.8e-23 PF00165: HTH_AraC" amino acids 1251 to 1289 (39 residues), 41.9 bits, see alignment (E = 3.5e-14)

Best Hits

KEGG orthology group: None (inferred from 92% identity to bvu:BVU_1267)

Predicted SEED Role

"Two-component system sensor histidine kinase/response regulator, hybrid"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1297 amino acids)

>ABI39_RS05130 response regulator (Phocaeicola dorei CL03T12C01)
MRKTVYVILALCCFIIKTYSINRPYYHFKQLSIKEGLPTSITSLYDDKNGSLWVGTTQGI
YRFNGEKIKKYNLPDLLRKNSHYINDIFGDNEERIWAVTSQGISYYEYEKDSLQIFLRHN
KPVKTSIIATEGSKLLIPVTDTLLVYEKELKHSKAIPLKTTGIRIIKMEPFDSTHYLIIN
NAWKIKLLNKHTGEITDSPFGESSNAYDLYKDSSGHYWVSFYGQGVKCYNQDGQLLTSYN
TRNSNLSNDIVLDITEWNKTIWLATDGGGVNIIYPDTRDIQILSNKENRQFPANSVTCLC
HSNNHMWIGMVREGVLGAEKGFITTYTKAAQNPASGLSDKCPLCLWEDKDGRIWIGTDGG
GINCFDPQTEHFTHYPQTLGEKIVSICPLSETELLASSFSKGIFRFNKKTGSYQRFSLPD
KDAETKLASSSAPTNIRVNDQNEIELYGNAFYRYIPGSQQLIPIFPSNQQLQYSWVYMGK
YRTYPFFHDRSNVFQYNKEKNEYETIAYEKNNQILAASIDTLGTLWIAGPNGITRIYLPS
NRKEPLKLPDGNDVITSLVIDHEGIVWMGSLGIIYAYNPQKNHFVIYNEMDGVLPNDFLA
KPVLVASDGNIYMGGSEGLVRINKALKSASIPPPITLELQEVSLNGTIVPFNSQSTMEIP
YNFSSLQIHTQLEGENVFHKRIYRFRIKGLNKEYTETSRPHLILHTISPGNYSITVQCTQ
NDGNWSSEFTLLKFTVLPPWWQQSWFILICAVIIILSIIYAIRAHDQHLKRKYKEQERTI
YKEKVKALININHELRTPLTLIYTPLKQLTNSKQIPYELRSKLYGAFKQARQMKNIIDMI
LNMRKMEVEKNILRMSPAPFNEWLQSILNDFKDELSLRNISLIFAPDTAIDSMYFDHSQC
EIIINNLLTNAYKFSEENSTVTVSTYLEGNGSRIRITVKDEGTGLQKEDIANLFTRFYQG
KHSLQGSGIGLSYAKQLVEMHGGIIGAQNNETKGATFFFTLPYRQEAADIQSTPQTYLND
ALHLSADIDRKQPQQDSIEKFHSILIVEDDRDLCNYLICNLQVLFEEVYEAHDGMEALPI
LTSRRPQIVLSDIKMPRMNGFELCRYIKQKPDLNYMPVILLTSCVDDTSMEEGYKMGAEA
YITKPFDMDLLFIQIQNIMHNHNFMKNHYATIDIPIQKQENLNYINEQLMIQFNRIINEN
ISNVNMDVNFIAQQMGMSRASLYNKTKGMMDMGISEYIIKCRLEYARKLLDTTTLSIGEV
AEQTGFKHSRNFSTVFKNIVGMSPSDYRKKDSRPSCK