Protein Info for ABI39_RS04710 in Phocaeicola dorei CL03T12C01

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 967 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF13432: TPR_16" amino acids 51 to 92 (42 residues), 16.8 bits, see alignment (E = 4.8e-06) amino acids 180 to 237 (58 residues), 19 bits, see alignment 1e-06 amino acids 586 to 652 (67 residues), 43.1 bits, see alignment 3e-14 amino acids 707 to 761 (55 residues), 17.6 bits, see alignment 2.7e-06 amino acids 848 to 904 (57 residues), 15.6 bits, see alignment 1.2e-05 PF13174: TPR_6" amino acids 177 to 204 (28 residues), 14.1 bits, see alignment (E = 3.6e-05) amino acids 282 to 306 (25 residues), 13.6 bits, see alignment (E = 5.3e-05) amino acids 546 to 578 (33 residues), 13.8 bits, see alignment (E = 4.5e-05) amino acids 583 to 615 (33 residues), 22.1 bits, see alignment (E = 1.1e-07) amino acids 625 to 652 (28 residues), 19.8 bits, see alignment (E = 5.7e-07) PF13181: TPR_8" amino acids 282 to 307 (26 residues), 14 bits, see alignment (E = 3e-05) amino acids 473 to 497 (25 residues), 13 bits, see alignment (E = 5.9e-05) amino acids 510 to 542 (33 residues), 17.5 bits, see alignment (E = 2.2e-06) PF13525: YfiO" amino acids 583 to 656 (74 residues), 31.9 bits, see alignment 7e-11

Best Hits

KEGG orthology group: None (inferred from 99% identity to bvu:BVU_1333)

Predicted SEED Role

"TPR-domain containing protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (967 amino acids)

>ABI39_RS04710 tetratricopeptide repeat protein (Phocaeicola dorei CL03T12C01)
MKRKTLLMAALMGGCSLQGMAQQITPKDVAGDKEYNRVCREYELKGGDSMELLQAYLDKY
PDSRHKNRVLSLIASAYFMEGKYKEAIALFRSCDLEALPDKERDDCAMRLATSYLKEDNL
REAAVWFTLLKEVSPLYQDDAVYNLAYIDYVEKRYDKALKSFQSLQNDAVYAALVPYYIG
EIYLVKGNYQQARTVAKAYLEQYPAKKDVPQMERIWGEACFGLNDYQAAIPPLERYRESV
SHPQRKPLYELGMSYYYTGVYSKAAATLGEMASVHDALSQNAYLHMGLAYLNLKERNRAR
MAFEQAANFSFDPKVKEQALYNYALCIHETSYSPFAESVTVFERFLNEFPNSPYTERVND
YLIEVYMNTRSYEAALKSIAKIEHPGTRIMEAKQKILFRLGTQAFANARFQEALEFFNQS
LAVGQYNQATKADAYFWRGESNYRLDRFPQAGNDYRLYLEFATSKDGQEYGLALYNLGYT
YFKQKNYGNAGTWFTRFVDRGSANERAMQADAYNRIGDCNFYDRRFEQARQDYARAVEID
PSLGDYSLYQEAFVRGLQRDYNGKVQTLNRLISDYPESQYMDDALYEQGRAFVQMEDNAN
AIARFNILVKKFPESNVARRAANEIGLLYYQDDKYPEAIQAYKQVIASYPGSEEARLAQR
DLKSIYIDLNKVDEYANFASTIPGGANFDVNERDSLTYVAAERVYMRGEVTEARNSFTRY
LQTFPEGAFSLNANYYIGLIDYNQKAYESAARHLDKVLEYPNNKYSEDAMLMGAEMAYTA
KDYEKALHIYKQLKDKAASMERRQLAKTGMLRSAHMLGNEEEIIFTATDLLADTKLAPEL
SNEAHYYRAKAYLDAGKTDGAMEDLKILAKDTRNVYGAEAKYKVAQIYFDGGQTDKAEQE
VLNYIEVSTPHTYWLARSFVLLADVYMKSGRNLDAKQYLLSLKQNYQADDDIAGMIESRL
EKLKTEN