Protein Info for ABI39_RS04085 in Phocaeicola dorei CL03T12C01

Annotation: glycoside hydrolase family 127 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 689 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF07944: Glyco_hydro_127" amino acids 52 to 420 (369 residues), 240.2 bits, see alignment E=3.9e-75 PF20736: Glyco_hydro127M" amino acids 438 to 530 (93 residues), 77.2 bits, see alignment E=8.8e-26

Best Hits

KEGG orthology group: None (inferred from 68% identity to bfs:BF0282)

Predicted SEED Role

"Putative glycosyl hydrolase of unknown function (DUF1680)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (689 amino acids)

>ABI39_RS04085 glycoside hydrolase family 127 protein (Phocaeicola dorei CL03T12C01)
MFKKKRNIGKLLLGSFLIVAVLTACMEEKREMKIDMLSRPGTIDRNVSYQGNRLPLKPLH
FIKLPVGTIEPEGWLKKYLLLQKEGLTGKLGEISAWLDKKDNAWLLSGGDHGWEEVPYWL
KGYGDLAYILKDSAMIAETKVWIEAAIQSRQPDGFFGPVNERGGKRELWANMVMLWCLQS
YYEYSGDKRVLTLMTDYFKWQLTVPDDKFLEDYWENSRGGDNLYSVYWLYNITGEQFLLE
LARKLHRNTADWTNESDLPNWHNVNIAQCFREPATYYMLSGDSADLQASYRVHHLVRRIF
GQVPGGMFGADENARLAYIDPRQGTETCGFVEQMASDEIMLRMTGDPFWAEHCEEVAFNS
YPAAVMPDFKALRYITCPNQVVSDSKDHKPGIDNGGPFLAMNPFSSRCCQHNHAQGWPYY
IENLVYATPDNGLAAIIYGPCCAQAKAGVNGTEVILREETNYPFEEMIRFTVQVSGKVDF
PLYLRVPAWCKGGTLIVNGETVAAGMESGKYVRLDRTWSNGDVVILQLPMSLSVQRWQTN
QNSASVNYGPLTFSLLIEEEYRKVSSAENAIWDSKWQKGADVNAWPTYEIYPQSAWNYAL
KLDDKVLEQCLKVEKREWPSDNYPFTADNVPLVIKAQGRRVPSWGIDQYGLCGVLPEEGA
PKSEILEDITLIPMGAARLRISAFPVTYE