Protein Info for ABI39_RS04075 in Phocaeicola dorei CL03T12C01

Annotation: glycoside hydrolase family 127 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 797 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF07944: Glyco_hydro_127" amino acids 46 to 431 (386 residues), 352 bits, see alignment E=8.5e-109 PF20736: Glyco_hydro127M" amino acids 442 to 534 (93 residues), 67 bits, see alignment E=2.6e-22 PF16375: DUF4986" amino acids 578 to 640 (63 residues), 30.4 bits, see alignment 1e-10 PF20620: DUF6805" amino acids 656 to 790 (135 residues), 45.7 bits, see alignment E=1.7e-15

Best Hits

Predicted SEED Role

"Hypothetical periplasmic glycoside hydrolase, family DUF1680"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (797 amino acids)

>ABI39_RS04075 glycoside hydrolase family 127 protein (Phocaeicola dorei CL03T12C01)
MKKYRLVFVLSILFLGVIKLTASEYEQVRKAPRVHVPVWQSFALSEVELTDSYFKKAMDL
HKGYLLSLDVDRLIPHVRRSVGLQGKGDNYGGWEKHGGCTYGHYMSACAMMYASTGEKAL
LDKLNYMLDELQECQKQTPDGWFITGKRGKEGYLQLLQGNVVLNQPDETGQPWNYNQNGN
SWYCIHKILAGLRDAYVYAGCRQAKDILMPLADFISHIALNSNRDLFQSTLSVEQGGMNE
VFVDIYSITGDKKFLQTAERFNHINVIYPIANGEDVLFGRHANDQIPKFMGVAREYEFSP
NDIYYQAARNFWNIVIKDHTLAIGGNSCYERFGVPGEESKRLDYTSAETCNTYNMLKLSR
QLFMLDGDYKYLNYYEHALYNHILASQDPDMPGCVTYYTSLLPGSFKQYSTPFDSFWCCV
GTGMENHSKYAESIYFKDNQELLVNLYIPSRLHWKEKGLKLTLDTYFPESDTVTVRMDEI
GSYTGMLLFRYPDWVSGDAVVRINGKPAQTEAHKGSYIRLLDSVKSGDVITLVFTRNLYI
DYAKDEPHFGSVMYGPILLAGGLGTDDMPEDKVIDNRACRESLPAKNIPMLVGPLADLDS
WIQCSSQHPLRFTVKNGGGQQGVGLIPYFQMHHQRHTVYWKLYSPDEFVYRTRSLTDEVK
IGDEKDEGKHALQGENDSIYWHDYFWAKNTRFRMAKDGWFSYTLHINKTEQKPYHLICRF
WGDEPDTCQFDILIDGNYLRTVSLNRKLYLTYVDDVYSIPADWTRGKDKVNVTFRAAQGK
NAGGLYELKITSDTNYR