Protein Info for ABI39_RS04070 in Phocaeicola dorei CL03T12C01

Annotation: glycoside hydrolase family 127 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 807 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF07944: Glyco_hydro_127" amino acids 36 to 429 (394 residues), 373.6 bits, see alignment E=2.3e-115 PF20736: Glyco_hydro127M" amino acids 440 to 552 (113 residues), 80.4 bits, see alignment E=1.7e-26 PF20737: Glyco_hydro127C" amino acids 554 to 659 (106 residues), 75 bits, see alignment E=6.4e-25 PF20620: DUF6805" amino acids 674 to 802 (129 residues), 57.5 bits, see alignment E=3.9e-19

Best Hits

Predicted SEED Role

"Putative glycosyl hydrolase of unknown function (DUF1680)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (807 amino acids)

>ABI39_RS04070 glycoside hydrolase family 127 protein (Phocaeicola dorei CL03T12C01)
MKKTLVILFVAGVLAACKSTDSNKSDYQYKDVPFTNVHFSDNFWASRIETIRSVTVPFAF
HKCEETYRIDNFAVAGKLMEGKFNSPYPFDDSDVYKIMEGAAYLLAVKEDKALDMYMDSL
IHLIGAAQEPDGYLYTTRTIGGDSQHPWAGSKRWENERDNSHELYNVGHMYEAAVAHYLA
TGKRSFLDIAIKSANLLCNTFGPEEEKITVAPGHQEVEIGLVKLYRVTGDKRYLDLSQFF
LEARGKYDKYDRNSEDQFRNGSYWQDHKPVIAQDEAVGHAVRATYMYAAMTDIAALKNER
HFENAVGKLWDNVVGKKMYITGAIGSTRHGEAFGKNYELPNSTAYCETCASIANCMWNLR
MFMLHGDAKYIDVLERSLYNGVLSGISLDGKKFFYPNVLSCDENGSERSEWFDCSCCPSN
LARFIPSVPGYVYATSSKGFYVNLYGANHADVVLKNGKHVQVEQQTDYPWNGKIKLILTP
ETPEDFAVMLRIPGWVNSQPVPSDLYTYTRHDKGAVKITINGKPRDFVMEKGYAVLSGSW
KQGDTIELSLPMDVHKVSANDKVATDVNHLAVERGPIVYCAEFADNGGTVLNYVLKPETA
FEAAPASMLGGVEILKGTTERIIAENDFKEIKSVTDSILLIPYYARSHRGNGEMAVWLPS
DENILKDQLKERARITDKVFIGKESSETAHQLKGENTHTGGPNTWRDASDGGWFSYTLRV
DPVQPMELVLTYSSTDGGNREFEIFAEHEKIGEQKLRVETFSAWIDKVYPIPVDLTRGKS
HVTVKIQALPGMIAGGVFGCRMQKQKK