Protein Info for ABI39_RS03460 in Phocaeicola dorei CL03T12C01

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 675 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF17801: Melibiase_C" amino acids 609 to 673 (65 residues), 33.9 bits, see alignment E=1.5e-12

Best Hits

KEGG orthology group: K07407, alpha-galactosidase [EC: 3.2.1.22] (inferred from 97% identity to bvu:BVU_0746)

Predicted SEED Role

"Alpha-galactosidase (EC 3.2.1.22)" in subsystem Fructooligosaccharides(FOS) and Raffinose Utilization or Galactosylceramide and Sulfatide metabolism or Lactose and Galactose Uptake and Utilization or Melibiose Utilization (EC 3.2.1.22)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.22

Use Curated BLAST to search for 3.2.1.22

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (675 amino acids)

>ABI39_RS03460 hypothetical protein (Phocaeicola dorei CL03T12C01)
MKNNWLTLKSLFLCVSALSASGLILSGCTENANLNVGEWSLEYDAHANGIDISKGSKLIY
DNVYAAYKLADSVVSTRDYAKHHVSTRKINDHFGEGYHYEVTYTGNNLPVLVQSFYVYPT
KDYVLTDFTLESTSEMASNYMAPVNVDRMPEVLNQGENNRALFIPFDNDCWIRYQSHPLT
FTELTSYEVTAIFNNDDREAMVIGSVEHDSWKTGITIGKGNIYNVGSLVCYGGVADKTTR
DSKPHGALKGTTIKSPKILVGFFEDWREGMEEYAQANAVIAPPKAWDKAVPFGWNSWGAL
QFNLTYPKALEVSDFYKENLQSHHFVNSDNLVYTGLDSGWNSFSEEELKAFVDRCKANGQ
IAGVYWTPFTDWAKNPEREIKEIPGYKYKDVYLYANGKPQELDGAYAVDPTHPAIEAMMK
RTSELFHRAGFEYVKMDFMTHGAMEADKWYNPEIQTGIQGYNYGMQLLDKYFGDMYINLS
ISPVFPAHYAQSRRIACDAWNKMKDTEYTLNALSYGWWQDKVYQFNDPDHIVLRDATDGE
NRARVTSGVITGIFIAGDDFSKGGSKEVKEKAMKYLTNAEINAIANGESFHPVDGNGEKS
ENQFVRMDKDGKAYYAVFNYMDQELKMTTALERLGLDSSKEYRLKELWSGIESIAKTNLE
VTVPACDVVIFKVEE