Protein Info for ABI39_RS03195 in Phocaeicola dorei CL03T12C01

Annotation: S1 RNA-binding domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1399 PF00575: S1" amino acids 11 to 76 (66 residues), 34.7 bits, see alignment 7.5e-12 PF13086: AAA_11" amino acids 447 to 639 (193 residues), 79.7 bits, see alignment E=1.2e-25 amino acids 675 to 713 (39 residues), 32.5 bits, see alignment (E = 3.2e-11) PF13087: AAA_12" amino acids 754 to 979 (226 residues), 139.3 bits, see alignment E=4.9e-44 PF02541: Ppx-GppA" amino acids 1112 to 1392 (281 residues), 83.8 bits, see alignment E=6e-27

Best Hits

Predicted SEED Role

"SSU ribosomal protein S1p" in subsystem Ribosome SSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1399 amino acids)

>ABI39_RS03195 S1 RNA-binding domain-containing protein (Phocaeicola dorei CL03T12C01)
MAYTVGQIIEEAKIINIKDFGAFVEIGPFQNGLIHFSQIIPKVEYGNVGNVLSIGDKIRC
AVSEIKLDGKVNLTMKIRKRIERKHQIEQVKKDIANMSNEDTSLRSIWMVLTNIQHYMLK
YMQLAIPLKKGSAGLNTKGNKLIAQIDSQIHFDNFKSEVRRLFSTNVVRHSQLSGFWYFE
TDADLYSDMQQFVDSCNNMYVTVRPNPVVEIQIKGADSTSKRIIKTRLQNYYSQLDFFEI
NENLMVVTVPYENRVALEDLKEELGYALNGIRNGVPDLAEEGKQTTFEPARFVYEINYPQ
DGADRFLLTLDNEALLDKEGLRFGGLYGQSFVIKDGENEYKLGKLCKIEYPNVTFNLLPE
DCGKIKEMADNDCITAVIPNMDDMTGEIEKVNRLRDSFDRITEHPEDLVNPQLASYLFDA
SKATKLEDEAIEQRVEHIKKCQLNESLNESQIQAIAKAVEAKDLAIVQGPPGTGKSTAIA
ELIWQLVQQKPDSRILLTSEANLAVDNALDRLKFSLHNIVKPIRVAAGDKFSAEGFAYSQ
VEMKKWAGIEMSDIDTEDNAVAIDTDEYKSFNPQELVLNRWMKNIYKRSQLHLQREDLKR
LWFDFLTDLPSEWRKEVYQEYVSHCNVIGATCSSISDTNYSATEAKGKHRDSRFIKRFRA
IFGETEKNGYPVFLRFNTVIQDEASKATPAELSLPLVYGEKAVVIGDHRQLPPNLDREDI
LFKLHMQKLKADSREEHDHIEQLESYVRKNFDILEKSHFERLFRQIDSSLRGTFDTQYRM
HNDINRVIEQFYVDDGGLKCGVANESRKHDIDIPNFISPDNHVIWINTSSPEVRDGTSRA
NRGEVEAIEWVLSQLSKSESFRSYQESQHTNEDREIGLITFYGSQLKRLKGIVEKETKKG
LSIKMSSVDRFQGMERNIIIVSMVRSNSIAQKWGQKPDYNRFPNAGYPAQKEYGFAKSPN
RLNVALSRAKRLLIIVGNGEHFSNYTNPQGQAIYKNVFDEVKNNPNGRIIEWNVRKPKQE
HVAKIVRVPMPIQRSVNLNTRDINAETDKNLRIKETWLTPNGQPIENPHFAVLELSTKAV
KLLIGRDEETIRTATLFDFNNFIRDAAKPETGKGLDSQNVMNMGYFRDRVLPVIKRMKQK
MRSEGVDVVYTVATAAYRTAKNRDEVIECIRREAGINVRILSKKEESVSTMFAYGISSRY
KLDIQKSRHSVMVDQGGGSTEVSVFNQGELEGSYSINLGTTALRNILTKDIPSATLLVDA
FKKSDQMLKERMVAFIKNMNTTMQTNENTFCVSVGSAITHATGKKKNAQQHDCILNYEQI
AEKIENLTVKLQEKFNTVGDLVRWEQQMTGDAIDDMLTLRMGLPMYLLLMEKFNIKQIHV
CGTGLWYGIYLQHLFNVAD