Protein Info for ABI39_RS03080 in Phocaeicola dorei CL03T12C01
Annotation: DEAD/DEAH box helicase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (2041 amino acids)
>ABI39_RS03080 DEAD/DEAH box helicase (Phocaeicola dorei CL03T12C01) MAKYLIDPIYAYKEIKDNFILYVKTAFGTRYKSIEEEREELLRTDQVAAREPWIEPLPAY KNVELDNGEKLRISSLRKQDLPTMNQESSSIFKEFILKGLIKGDYPIYQHQAEMLRKALE GKNCVITSGTGSGKTESFLLPMLASIIQEAENEWKQPVAYTPNRWWNANDGNPLLMQDIF EFPQGAEQGTPGYLASSAMQRPNEKRDAAVRALIIYPMNALVEDQMTRLRDALDNDEVQK WMTERLHGNRIFFGRYNGATPTPGYPKFGETDRNRRIYQSLLSSMNALDKMTDDTLKLLD SNLSEEQQRKNKKKYEVRRTISQMICGKDGIASSEMRSRFDMQQTPPDILITNYSMLAMM LMREVDNPIIEKTRQWLAKSSSHIFHLVIDELHLNRGTSGTETAYLIRLLLNRLGLSPDS PQLRILASSASLEVTGTKRNESLKFLKDFFGTEFTADNVVEGHYMQTVQSYNSVLPTEPF VRIYDLFYENPSCFEEYQTKAEIKNRVDEVCSNVALSLATYAHCELPDTDGLAQLLHVFA SDELSIAKRLSDTFDLKELGHNRAIPFSKGKGEPESANALGRYFVDYLFGNMKDESVKAA EGLVIIRGLYDIFDKVDCGPMQRFRFHLFYRNIDGLWATLEKYDEEKGRPVGKLHAHSYE IDGDKRVLELLYCEQCGTLFYGGKRHAYREQGMWKTDILPTSSNLEDLPERQSQVMVEKR NYHEFAIFYPVPSSIRDVDRMLQEVGVGLQHKISFNENRENLSCHWQLAFLDEKTGHVTI AQDGEQHSGIRGFLYTVEALDGEQNIDAAIKAPALPCHCPHCATDRFGRSFRSPLRGFRT GFNKVTQLYARELFYQLPTAHNRKLVTFADSRQDAAVVANSIERNQYTDLMRDIIVEECT LDPSIDYEAKRNYLDELLTDKNEAKTTLDNPNATSREIRSAQRTLNTIDDEIAEVKNILE KTIPVEQLINTNNCIDSPIYKAFRELYTNPAGCNSANQHFEETPTASPVMWYEIDNNASP LLKQDVNRKVGSAIIQNVMHVLFGRLHYNAESAGIGWVTVLRDENRIHGILTNSGLADIS SDVFMEIVNSVIRLIGNSYRYTNNPYDIFPTDSDANFQNLKAKSPIRRYIYSCCDKYRIP YVRQNGRQTKVPNILGQAVLDYLALTGNQQMFLQPHALLIRGVLPNEIGYICPKCGRVHL NKSAGICTGCFQHLDEIHTITIDELRRQTDLMINIVKHRPACRLHSEELSGQTDNQSERQ MEFRDIVRIDQNSAHAEYIEKVRSIDVLSVTTTMEVGVDIGPLQGVMLTNMPPQRFNYQQ RVGRGGRRGQAYSMILTLCRGRSHDEHYFLNPHQITGDQPPTPFLSMNQLEILQRLYAKE VLYYAFKSYSDESNVRLDGNTHGEFGTRQGWIDNVGAIKDYVQSWLCNTTNLDKLYHIAT LLTNDKNLVSKLVQYVSDITNKNCLIMQMDRTVTDQSIVADMLAECLAEGGVLPMYGMPT RDRLLYHSLQYTEGNVVKEEIASVSRPIDQAITAFAPGASITKDKHILTSIGFSQSSIVY GIGINGQGCIKTKGNANAPIFPLRMTLWECSNPSCKCIVTDNRNPNTQGVVCDYCMSPMT SKTICTPASFITSLSKGFDQKDDSEIIVKRNGICMENSERPIVKVFDDMNVSLSLFRNGK TWRISDKEIEGRECSVSYNLNGTRIRSLAKQWIANPIYNGTDSPNILNGNVTLLPPDDKD VKTYITPLGNRLETIHLAAQKITNVITLSPANRVEGLILEPFHCVNNRLDFRTQGVRAAY YTLSFLIQRAIASKLDIDPTEIDVVEVLSKTGNLGEVCLADEKINGSGFVADFCLNFLDY RDRILNGMDLYFKQMLSDEHIKECDSSCYKCLKSYKNMPYHGLLDWRLGIALFRVMCDNN YKAGADGKFNTPELKGWSELAETLLKSLNEGFYSTNPYQIAKTNNGIPYMYDTEGKRKPV FASHPLWEGVAETQILADAVFEASLICNAKWDSSNVITIDTFNLLRRISNCYEYIQIQQN I