Protein Info for ABI39_RS02940 in Phocaeicola dorei CL03T12C01

Annotation: SusC/RagA family TonB-linked outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1056 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 41 to 1056 (1016 residues), 672.7 bits, see alignment E=1.2e-205 PF13620: CarboxypepD_reg" amino acids 43 to 110 (68 residues), 34.6 bits, see alignment 3.2e-12 PF13715: CarbopepD_reg_2" amino acids 43 to 122 (80 residues), 60.3 bits, see alignment 2.2e-20 PF07715: Plug" amino acids 133 to 256 (124 residues), 74 bits, see alignment E=2e-24 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 232 to 262 (31 residues), 65 bits, see alignment (E = 3.9e-22)

Best Hits

KEGG orthology group: None (inferred from 71% identity to bvu:BVU_0571)

Predicted SEED Role

"SusC, outer membrane protein involved in starch binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1056 amino acids)

>ABI39_RS02940 SusC/RagA family TonB-linked outer membrane protein (Phocaeicola dorei CL03T12C01)
MLKRLKSVSMLLFLMGASTGAAYAVANPGVTDVKITQQSGTCTGVVKDATGETVIGASVV
VKGTTNGTITGIDGDFSLSGVKKGDIIQISFVGYQTVEVPWNGQPLNVTLQDDTQTLQEV
VVTALGIKREKKALGYAMQEVKGDALVAARETNLANALSGKVSGVQIIRSSNGPAGSSKI
QLRGSNSVTGLNQPLIVVDGVPLDNFTGADNNDMWNPSTDMGNGLSDINSEDIESMSVLK
GASAAALYGSRAGNGVILITTKKGTKSEGLGVTFSGSVSVENVFMKPERQTIFGQGSNGI
FNATSSSNWGPAITGQSYTDWNGRTQNMQYFDNVANFFKTGVNLTENIAFSQQFDRTSVY
LSATRMDDFSKIPGAEYSRTNLMSRITSSFGKDNRWSVDAKVQYILSDATNRPISGARSD
NYFYSMYMMPISLDIREFKQAKNPEDGKMYWWEKGSGQNPYWAKDYNTNQDKRNRFLLNG
SLKYQITDWLNAEIKAGSDMYFTETETKLYAGSPSSENGRYSFGEQKFYENNFSFLVTAQ
KDRVLGDFGGVFTFGGNLMERKSTGVSNSVSALTVPDLFWLTNSTDSNRSISQTYTHRKT
NSLYGTLGVNYDGWAFLDLTGRNDWSSTLSKSNRSFFYPSISASWVISDMINNRGKGMPE
WFTYAKARVSFAQVGNDLDPYQLYNVYGIGSIYETGGTSASVSGSTLFNEDVRSELISSW
EAGAEVRFFNNRLGLDVAWYKSNAKRQLLNLPMNSLSGFSSMKINAGNIQNSGVEIMLNA
TPVQTKEFTWDTQVNFSTNKNKIIELADGINEYTLGTYDNLKILAVAGGNYGEIWGTTYL
RVTDENSPYYGKMLLNDAGLPQGDSKIQKIGDQQATCLVGWTNTFSYKNFTLSFLVDARI
GGEIFSGSNRMLQANGVAACTVVNGKRDKFVVDGVIADGNGGYSPSTIEVEPQSYWTAVT
GSTGNMGIGEANLYDATNVRLRNVSLNYTFPRKMLAKGPFQQVKLGMSCNNVWMIHSNLH
GIDPESVFATSTNATGFENASSPTSRTFLFNVTLGF