Protein Info for ABI39_RS02720 in Phocaeicola dorei CL03T12C01

Annotation: LrgB family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 231 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 31 to 54 (24 residues), see Phobius details amino acids 64 to 83 (20 residues), see Phobius details amino acids 90 to 114 (25 residues), see Phobius details amino acids 145 to 166 (22 residues), see Phobius details amino acids 203 to 228 (26 residues), see Phobius details PF04172: LrgB" amino acids 14 to 226 (213 residues), 260.8 bits, see alignment E=4.1e-82

Best Hits

Swiss-Prot: 42% identical to YOHK_SHIFL: Inner membrane protein YohK (yohK) from Shigella flexneri

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_0521)

Predicted SEED Role

"LrgA-associated membrane protein LrgB" in subsystem Murein hydrolase regulation and cell death

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (231 amino acids)

>ABI39_RS02720 LrgB family protein (Phocaeicola dorei CL03T12C01)
MEYLENKFFLLAFTFGVFFLSRVLQKKTGWVVLNPILLTIAVLILFLKFTGISYEIYNEG
GHLIEFWLKPAVVALGVPLYLQLEMIKKQLLPIVISQLAGCLVGLVAVVVIAKLLGATPE
IICSLAPKSVTTPIAMEVSKATGGIPSLTAAVVVVVGLFGAVFGFKVLRVGHVGSPIAQG
LSMGTATHAVGTSTAMEISGKYGAYASLGLTLNGIMTAIFTPTILRLLGVI