Protein Info for ABI39_RS02175 in Phocaeicola dorei CL03T12C01

Annotation: PQQ-binding-like beta-propeller repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 818 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF16371: MetallophosN" amino acids 39 to 102 (64 residues), 48.1 bits, see alignment 2.9e-16 PF00149: Metallophos" amino acids 116 to 292 (177 residues), 40.1 bits, see alignment E=1.4e-13 PF13360: PQQ_2" amino acids 506 to 609 (104 residues), 60.5 bits, see alignment E=5.1e-20 amino acids 577 to 734 (158 residues), 53.6 bits, see alignment E=6.2e-18 amino acids 639 to 799 (161 residues), 63.9 bits, see alignment E=4.4e-21 PF13570: PQQ_3" amino acids 518 to 557 (40 residues), 33.8 bits, see alignment 8.5e-12 amino acids 729 to 779 (51 residues), 21.6 bits, see alignment 6.1e-08 amino acids 781 to 816 (36 residues), 26.4 bits, see alignment (E = 1.8e-09) PF01011: PQQ" amino acids 540 to 566 (27 residues), 23.6 bits, see alignment (E = 7.8e-09) amino acids 762 to 797 (36 residues), 30.1 bits, see alignment (E = 7e-11)

Best Hits

KEGG orthology group: None (inferred from 94% identity to bvu:BVU_0400)

Predicted SEED Role

"FIG00408892: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (818 amino acids)

>ABI39_RS02175 PQQ-binding-like beta-propeller repeat protein (Phocaeicola dorei CL03T12C01)
MKKTFLLSCLMLAAMPVMAAYTGRVYVDKNKNGVFDPGEKTWAGIKVSDGLNVVETAADG
SFTLPGHERERFIFITTPSGYKTFNRHYHKIEEKQSGYDFGLMPYSGRIRKDGSHKYIHI
ADTEIFNTENHEDWVNNVRDYARNEQAAFIIHTGDICYEKGLKAHIKLMNTENMDCPVFY
CIGNHDLVKGKYGEELFESIYGPVYYSFDAGNVHYIVTPMPGGDHAPGYTADDVCRWLKN
DLAHIRPGTPVVVFNHDLLTYEDAFIFKSKNAGSINLNEHNLKAWVYGHWHINYMKKQGD
VYSVCTSSLDKGGIDHSTTAFRVMHVDSKGDFTSELRYTYLDKNICIASPAGVMASDVLP
VAVNVYSSVSPVKEVLYTCLADGKPVLKNKRLLQSTDWSWNGELPLSDKYVGKELTLQVT
ARFNNGEIAKAESNFVCRTEKVAPLFSADWDNLLGNAKHSAPTSGPLNLPLQLAWTHNVG
ANLYMTSPLIHKGKIIVASVDEDLKGAGHVYALNGKDGSTLWSYPVRNSIKNSIAIDGDI
VFAQDAQGFLYAIDTETGKLCWEKQLPVNGLPALIDGLVADEGMVYAGTGKGLCAFEART
GKQLWRNEGWGQGEGTTSTLTLGNGLLIGSAQWNALYGNDAQTGEKLWAASDNGLRNRGA
SPAMHGALLYLISDKSFFILEAATGKVIVRKPLPYNVDVTSTPLLTDKEIIFGSAQKGLI
ALDSETLEEKWTCPVGDALVYTCPYSRQSSATIETSAVWAGDIVYVAASDGTVYGINKEN
GKVVWKHATGAPVFGSVALSGNALVVSDFGGNVYLFCK