Protein Info for ABI39_RS00910 in Phocaeicola dorei CL03T12C01

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1121 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 37 to 1121 (1085 residues), 816.5 bits, see alignment E=4.4e-249 PF13620: CarboxypepD_reg" amino acids 38 to 101 (64 residues), 43.9 bits, see alignment 3.9e-15 PF13715: CarbopepD_reg_2" amino acids 39 to 120 (82 residues), 73.2 bits, see alignment 2.2e-24 PF07715: Plug" amino acids 128 to 235 (108 residues), 76.1 bits, see alignment E=4.5e-25 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 211 to 241 (31 residues), 67.2 bits, see alignment (E = 8.1e-23)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1121 amino acids)

>ABI39_RS00910 TonB-dependent receptor (Phocaeicola dorei CL03T12C01)
MKDRKNSSLLGRLDKFQRLFFVALLSVLAVGAFAQSKTVSGTVLDKTGESVIGASVVVKG
TTNGTITDFDGKFTLQNVPDNGTIQVSFVGYKTVDIQVKGQSTVKVILEEDTETLDEVVV
VGYGVVKKSDVTGALTKVSEKQIKERPVQNALQAMQGKAPGVDITTNSRPGELGDVRIRG
NRSITADNDPLYVIDGIPMVAGSIADINPNDVESMEILKDASATAIYGSRGANGVVLITT
KKGKVGKVSINYDGTVTFSKIHSMTDWMDSGELIDWKRQAYINTGAYSGTYGNAPDPNID
GDLLFSDNGGGVSNYPYLNQYFQKAWEYNADGSYKMRPATDYEKEVLGYADQVPVYNSAN
IPTTPWTDYVTRTAITHNHQISLSAGSEKSNLYISLAYLDQESPMKDQDFKRYTANINGE
IQATNFLKVGMGMNASHSIKNYGIINNTSNSTYKDSYGYAVAKMPFAPAYDEEGKPLNVD
GGPSQYNPMLDVYQATNETRYYSVMFNSYGEIDFGKIWSPVEGLKWRTNLGTQYRNSRYG
SYYGNDFSNPLKHSAYAANTAFNQQGQNLSWTLENLIYYNKIFKNIHSVGLTLMQSAEYS
RAEGLEVRAYNCTFPTALWYSVGNSDLTMDSPGSSFSEQKRASYMARMNYGLMDKYLLTV
TGRWDGASMLAVGNKWDFFPSAALAWKMNEENFMKDVKWINQLKVRVGYGVTGNASIKPY
QTSGTMTASGAGKFFGVGNITQVTIGAKASVLPNLDLGWEKTASTNIGVDFGFLNNRISG
SVEYYVAKTSDLLLAKSLPLMTGYTSITTNIGKTQNKGLEITLSTTNIQTKDFTWKTDFT
FSTNKEEIVELAGGKVDDTANKWFIGKPKDEIWTLKYDRLWQNTPEDLRTLELYEKISKT
VMQPGMAKVVDQPLIEVPEGTEGAKTVTLNSGERVTYMDNGFGTINTEDNKFLGSFQPKW
IGGFTTTFIYKNWQLNSFVYARMGNMYYGLLQTYGRRVEKDVWSTENPNGKFPQPRSGGV
TTTDYSAYMNYTKGNMVAIRNIALSYTFPEKWLKKLGAASCQIYGQVLNPFIFGGELVKS
GINPDDTTGWSEKTNDTNFIGGQTNNTILTRSYVIGLRLGF