Protein Info for ABI39_RS00815 in Phocaeicola dorei CL03T12C01

Annotation: rhamnogalacturonan lyase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 635 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF18370: RGI_lyase" amino acids 32 to 111 (80 residues), 71.9 bits, see alignment E=9.1e-24 PF21348: RGL11_C" amino acids 126 to 624 (499 residues), 755.6 bits, see alignment E=5.2e-231

Best Hits

KEGG orthology group: None (inferred from 98% identity to bvu:BVU_0152)

Predicted SEED Role

"Predicted rhamnogalacturonan lyase in rhamnose utilization cluster" in subsystem L-rhamnose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (635 amino acids)

>ABI39_RS00815 rhamnogalacturonan lyase (Phocaeicola dorei CL03T12C01)
MKTQKKLWSALAALCVATVTVAQPAYNYSKLQKEQLGRGVVAIRENPSEVVVSWRYLSSD
PINTSFNVYRNGEKIAEVPNSTGTFYRDTYSGNEKAVYTVKPMINGVETGKLNGNYTLPA
NAPSGYIDIPLDRPAEGVTPSGQKYTYSPNDASIGDVDGDGEYEIILKWDPSNAHDNAHD
GYTGNVYFDCYRLTGEKLWRIDLGHNVRAGAHYTQFMVFDLDGDGKAEVVMKTSDGTKDG
KGKIIGDAKADYREPGITDGNSHGNTPRNQGRILTGNEYLTVFNGLTGEAMKTIDYVPAR
GKLTDWGDNRANRSDRFLACVAYLDGVHPSVVMCRGYYTRAVLAAFDWDGKNLKQHWVFD
SNNPGCGDYAGQGNHNLRVGDVDGDGCDEIIYGSCAIDHDGKGLYSTRMGHGDAMHLTQF
APGLKGLQVWDCHENKKDGSTFRNAATGEVLFQVKSSIDVGRCMAADVDPRNPGVEMWSS
DSKGVRNIKGEVIRSDLKSFSVNMAVWWDGDLLRELLDKNRITKYDWEDDVCRPLMIFDG
TDSNNGTKSNPCLQGDIIGDWREEVLLRTEDNSALRLYVSRIPTEYRFHTFLEDPVYRIS
IATQNVAYNQPTQPGFYFGPDLKEGIFRGYEFKNK