Protein Info for ABI39_RS00655 in Phocaeicola dorei CL03T12C01

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1088 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 46 to 1088 (1043 residues), 815.3 bits, see alignment E=9.9e-249 PF13620: CarboxypepD_reg" amino acids 46 to 103 (58 residues), 41.6 bits, see alignment 2e-14 PF13715: CarbopepD_reg_2" amino acids 47 to 127 (81 residues), 70 bits, see alignment 2.1e-23 PF07715: Plug" amino acids 135 to 242 (108 residues), 68.1 bits, see alignment E=1.4e-22 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 219 to 248 (30 residues), 56.4 bits, see alignment (E = 2e-19)

Best Hits

Predicted SEED Role

"SusC, outer membrane protein involved in starch binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1088 amino acids)

>ABI39_RS00655 TonB-dependent receptor (Phocaeicola dorei CL03T12C01)
MKNDFFKISSKRILFSMMMASALLAGSPQAIFAGVNEIQAVMQTGTVKGQVVDVQGEPII
GASVLVKGTTNGTITDFDGNFTLGNATRGTLVVSYIGYKAQEVIIKGRNLVKVVLQEDSE
ILDEVVVVGYGTQKKATLTGAVSVIDADETLKGRATTNVATSLQGTIPGLTITRTTSRPT
EDPTLSLRGGISTNDNKPLILIDGSEAYTWELNTINPNDIENISVLKDASASIYGARAAG
GVILITTKRGKAERLTVTYNGAVTANFQGKRYPAATGSEWAKMMLSAAHEDINGSVWSIM
DFTEDEFKRVANNEAFDWTTKSGIKYRIDPLNAYQPDYVYGTTWSHNHNLSISGGSEKIQ
TKTSIGFADDRSIIKVTYDGQKKYNFRNNTDFKLGDYVKLATNIAYDNRYKNVPSKGIGF
GLQDFYVFPLYTEDGTKYYDNFGGNNVLAHLTEAGRTKNKFDSFRLGGKIDIDLSFLHSS
LKGLSISAKANVRQDHTNWRTINKTIQMYDYYTGEVTNNAQTSSQSKTPQMYENNSSNLY
QDYEFFLNYDRTLDRHHIAVMLGNTNELRENRSLTVHRTASSNQELEDLSVYDASSTELV
SNDDWGKTEQYRWAFVSFLGRVNYDYAGKYMIEGTWRRDGSSKLVKEQRWQNFFGVSGGW
RISEENFIKNNITWLDNLKVRGSWGEAGNLSSIGNYESFATIGTGTTIFGTTPGLANTAW
IGGIIDTSRTWERVETTNIGLDFGVLGNRLSGSFEYYWRKNKGMLMSITYPKVLGASAPA
TNSGTYKAEGWELALNWQDRINEDWSYNIGFILADAKTEIASYEGAISKKAGVNKIVEGY
PMNSLWVYKTDGLFQNQSEVDAYYSQMTGNVSGSKLTSVKQGTDNALTPGSVRRVDLNGD
KDITIDDLYYFGDMAPHYTFGINLGLTYKGIDFSAFFQGVGQQYNIRSGQMGCAFWSGWT
NTNGYFLGNTWTSDDNPYYPGNQGDDVFPVMSRNGNRNTWNYKDYNDLNVMNNWYVRCKS
IQLGYTLPKSWISKAGIQNLRVWLAGENLFDISNVKDGFDPEANYEMGTYSGLEVFSSSV
SFGLDITF