Protein Info for ABI39_RS00625 in Phocaeicola dorei CL03T12C01

Annotation: heparinase II/III family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 759 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF07940: Hepar_II_III" amino acids 362 to 531 (170 residues), 65.9 bits, see alignment E=2.2e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (759 amino acids)

>ABI39_RS00625 heparinase II/III family protein (Phocaeicola dorei CL03T12C01)
MKRIYVCLLIFLCFAFVQAQKIKHPALLYTPERIQQVKQRIVNDLKMAEAWASIKKTADE
QLQKKNLSKADYLALAYLMTDEKKYADKLKEILLDVIKEDTWGSEEMLARIPVWRADLGL
AHKAYLSAIAYDAVYNDLSSSERKEIAEGLKRLALDPCLGDWVLEPARIHSLNSMGHNWW
TSCACMGGILALSLQNELPEAKQGAEAVYEALPQWFDFAGDVLQQKPKSFDADGGMYESL
NYANFGIQEALQFRLAWMNTHPGQKPVQIPQLNKLSDFFVHVCYPRTGILYNMNFGDSHK
NVTAESTLMLLYAIGIRNDNMLWYMNQVEQGQHRDGYFIDRPMGFLYTPDLSKAPQLPEI
KKSQLFADFGWATMRTSWEKDATMLAVKSGHTWNHSHADANSFIIFHKGVDIIKDAGNCW
YPNPSYRNYFFQSEAHNVVLFNGKGQSREQQYHGSMLRGYLHYLLDADNVKYVLANGTGP
YSDQFSRNFRHFLWIDDVIYMIDDLKTHDVGHFEWLWHPGGEAEKRGIDLNITNGNSSVV
VRPLYPRLLAKSDFVHDYPEDLYWEEVEAPTEDLKGTETYYSFHLPAKVDRVKGLTAIIL
KETPDQKDLPYMERREGKDWIGLRIRYKGKITDLYINQLADGRLMHSNSWIEADGWFTDA
YMFAVTYEAGMEPADSKERFICYGSALRRGDVSFFSSLAKLFVIQKEENGRMKLWMDGQP
KMNAGFRSEKRPKAVVVNGKVTPVVYEKGTVKVSGVVIE