Protein Info for ABI39_RS00470 in Phocaeicola dorei CL03T12C01

Annotation: family 10 glycosylhydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 559 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF02638: GHL10" amino acids 25 to 297 (273 residues), 180.3 bits, see alignment E=5.3e-57 PF13200: DUF4015" amino acids 53 to 240 (188 residues), 29.3 bits, see alignment E=4.8e-11

Best Hits

KEGG orthology group: None (inferred from 98% identity to bvu:BVU_0089)

Predicted SEED Role

"COG1649 predicted glycoside hydrolase" in subsystem Predicted carbohydrate hydrolases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (559 amino acids)

>ABI39_RS00470 family 10 glycosylhydrolase (Phocaeicola dorei CL03T12C01)
MRTFFITLLLVIVSFLSVFSQPKYEIRATWLTTLGGMDWPRNKAINASGIRRQQKELCDI
LDRLKAANFNTVLLQTRLRGDMIYPSAIETFAESLTGSTGGNPGYDPLAFAIGECHKRGM
ELHAWIVTIPAGNTRQVQLQGRSSVVRKNRTICKLYKGNWYLDPGNPGTKEYLSCIVKEI
TSRYDIDGIHFDYIRYPEQADNFPDKDTYRKYGKGKELKQWRRDNITDIVHRLYTDIKTI
KPWVKVSSSPIGKYRDTNRYPSRGWNAYHVVYQDAQKWLKEGIHDALFPMMYFQGNNFYP
FALDWKENCGNRWIIPGLGIYFLSPNEQNWPLDEIVRQLYFTRQIKLNGQAYFRNRFLLN
NTKGIWDELQENFYTTPALIPPMTWMDSIPPSTPAMPSLQLLPDGKMHMSWQISTDNNGG
LVTYHLYASDTYPVDITDAGNLLETYLTHTEYEYTPISPWRQKRYFAVTAADRFGNESAP
LELNAISETDMPLLNDGDILTLPEIKEAKTVKIFTATGEEIKYFVYAPQMSIASLPGGFY
TVYILNNAGAQTFVGTIVK