Protein Info for ABI39_RS00325 in Phocaeicola dorei CL03T12C01

Annotation: sel1 repeat family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 317 transmembrane" amino acids 7 to 32 (26 residues), see Phobius details PF08238: Sel1" amino acids 71 to 106 (36 residues), 35.5 bits, see alignment 5.1e-13 amino acids 109 to 142 (34 residues), 31.8 bits, see alignment 7.8e-12 amino acids 143 to 178 (36 residues), 33.7 bits, see alignment 1.9e-12 amino acids 179 to 211 (33 residues), 37.3 bits, see alignment 1.4e-13 amino acids 215 to 250 (36 residues), 29.7 bits, see alignment 3.7e-11 amino acids 251 to 286 (36 residues), 41.9 bits, see alignment 5.1e-15

Best Hits

KEGG orthology group: K07126, (no description) (inferred from 49% identity to bvu:BVU_3175)

Predicted SEED Role

"FIG00410327: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (317 amino acids)

>ABI39_RS00325 sel1 repeat family protein (Phocaeicola dorei CL03T12C01)
MDKWRSYCSGIGICLILIAVIGICALHDQIYMWSLGNISDRYRQGMNAYREHDYDEARNR
FIPLAGIDSASYAQYLLGDMYYRGLGGRVDYEKAFALFEKSGEAGNMNACNNLAFMYAYG
HGVSENLSKAKKHFQYAAQQGNPQAQLGLGTLYRLGLGVQLDYRKAIQWYRRSASHGDSD
AMNNLGYMFFNGLGVLPDVETALYWFGKSAAVDNPVAQYNIGVAYSLGRGVEKDLSVCAS
WLEKSALQGNAPAQYNLGRMYFWGKGVARDSVKAMLWYKEAAERGHVKAAESFARIEKNM
RIEDADSIFSLDMQVGR