Protein Info for ABI39_RS00275 in Phocaeicola dorei CL03T12C01

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1026 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 340 to 357 (18 residues), see Phobius details amino acids 364 to 383 (20 residues), see Phobius details amino acids 389 to 410 (22 residues), see Phobius details amino acids 444 to 465 (22 residues), see Phobius details amino acids 471 to 494 (24 residues), see Phobius details amino acids 534 to 553 (20 residues), see Phobius details amino acids 857 to 877 (21 residues), see Phobius details amino acids 887 to 907 (21 residues), see Phobius details amino acids 913 to 932 (20 residues), see Phobius details amino acids 961 to 978 (18 residues), see Phobius details amino acids 990 to 1016 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 1 to 1016 (1016 residues), 574.3 bits, see alignment E=9.5e-176 PF02460: Patched" amino acids 321 to 493 (173 residues), 34.9 bits, see alignment E=1.1e-12 PF02355: SecD_SecF" amino acids 832 to 1015 (184 residues), 49.9 bits, see alignment E=5.3e-17 PF03176: MMPL" amino acids 856 to 1013 (158 residues), 20.7 bits, see alignment E=3.7e-08

Best Hits

KEGG orthology group: None (inferred from 98% identity to bvu:BVU_0060)

Predicted SEED Role

"RND multidrug efflux transporter; Acriflavin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1026 amino acids)

>ABI39_RS00275 efflux RND transporter permease subunit (Phocaeicola dorei CL03T12C01)
MVKFLLQRPIAVLMAFTACFIVGLVTYFSLPVSLLPDIAIPQITIQMTGENSSARELENT
VVTPVRRQLLQVAGLREIKSETRDGAGVIRLEFDFGVNTDLAFIEVNEKIDAAMNSLPKE
VTRPKAIKASATDIPVLYVNMTLKNDGAYRETDEQQFLELCELAENVVKRRIEQLPEVAM
ADITGVPGRLLQIVPDKDKLAMTGISVEDIENTLSANNVEPGSMLVRDGYYEYNIRIATL
LRTPEDVRNIYIRKGERIMQLKEFCKVDVVSQKEMGRSVAGGKRAVTLAIIKQSDENMDA
MKAKLKETTDYFASLYPDIEFSVSRNQTELLDYTISNLQQNLSLGFLFIFIVAVLFLGDV
RSPLIIGISMVTSIVITFFFFYFCHVSLNVISLSGLILAVGMMIDSAIIVTENISQYRER
GYSLKRSCAVGTTEMITPMLSSSLTTIAVFVPLIFMSGIAGAIFMDQAFSITVGLMISYI
TGIMLLPVLYLLFYKAGIRSKGFLSRRFDNLLKNEWLESFYDKGIDWVFSHKKLCVAGTL
ATLPLCVFLFYVMEKERMPQIDQNELVARIEWNENIHVDENNRRVDDLMKQVDDRVTEHT
AYVGMQDYILNGGSELSSTEAELYFKTESPSGIFSLQELLGKEIREKYPLAVVTFSPPET
IFEKLFVTGEADVVAELHTANKSQAPEAERLQRLEKEITQVTGNVPTGIAFRNQMNLIIN
KEKLLLYNVSYDELTRVLRTAFKENKVSTLRSYQQYLPISIAGEEKSVNSVLSETLVRTM
ADGNGEVNYIPLNNLVTVVPAEDLKSITAGKNGEYIPLSFYDVKDAPGLMRKVKEVVNEE
KEWEVDFSGSFFSNEKMMGELTVILFVSLLLMYFILCAQFESFLQPLIVLMEIPIDTAFA
LLALWVFGHTLNLMSAIGIIVTCGIVVNDSILKMDAINELRKAGMPLVEAIHTAGRRRLR
AIIMTSLTTIFAMVPLLFTSDMGSEMQKPLSIAMIGSMVVGTLVSLFIIPLIYWFIYRKH
DKNEVH