Protein Info for ABI39_RS00265 in Phocaeicola dorei CL03T12C01

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1058 transmembrane" amino acids 9 to 30 (22 residues), see Phobius details amino acids 339 to 357 (19 residues), see Phobius details amino acids 364 to 385 (22 residues), see Phobius details amino acids 391 to 411 (21 residues), see Phobius details amino acids 423 to 443 (21 residues), see Phobius details amino acids 455 to 478 (24 residues), see Phobius details amino acids 515 to 541 (27 residues), see Phobius details amino acids 900 to 918 (19 residues), see Phobius details amino acids 925 to 946 (22 residues), see Phobius details amino acids 952 to 972 (21 residues), see Phobius details amino acids 999 to 1018 (20 residues), see Phobius details amino acids 1025 to 1051 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 12 to 541 (530 residues), 216 bits, see alignment E=4.1e-68 amino acids 595 to 1051 (457 residues), 131 bits, see alignment E=1.8e-42

Best Hits

KEGG orthology group: None (inferred from 98% identity to bvu:BVU_0058)

Predicted SEED Role

"RND multidrug efflux transporter; Acriflavin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1058 amino acids)

>ABI39_RS00265 efflux RND transporter permease subunit (Phocaeicola dorei CL03T12C01)
MSNPRNLSSFTLIVTFVCLSLIGVVLVPLLPVKLAPSRTLPGLTVSFSMPGNSSRVIEAE
VTSKLEAMMARVKGIRKVNSTSDNGSGSISLELDKHADIDVTRFEVSTIIRQTWPQLPEG
VSYPQISTRRSDDKASRPFITYTLNAPANPILIQQYAEENIKPVLGQLKGIYKVELNGAT
PMEWQLEYDSDQLSHLGITLQAVQRAINRHYEKEFLGICSIEKGAEGREWIRLVRTSTEK
EMEFEPGAIQLQAEDGTMVMLDKLIKVRHVEERPQSYYRINGLNSVYLYVTAEETANQLN
LSGEVKHLMGELQQKMPPGYEVHISYDATEYIQKELDKIYFRTGLTVLILLLFVALITRN
LRYLFLIVASLVVNISVAVILYYTFGLEMQLYSLAGITISLNLVIDNTIVMTDHILHRRN
LKAFVSVLAATLTTIGALVIIFFLDEKIRLNLQDFAAVVIINLAVSLFVALFFVPSMIDK
IGLKKKKRRKRRRFLLRPTFMKRLTVYFTRFYQGLIYYLCRFRVIACLLLLLGFGLPVFM
LPEKMEGEGKWVEYYNKVFDNSTFKDKVKPVINKALGGSLRLFAEKVYEGSYFNRDEGEV
VLSVYATLPNGSTLEQMNVLIKRMETYLSDFKEIRQFQTYIYNARQANIQIYFTKENQRS
GFPYTLKANIISKALTLGGGSWSVYGLQDQGFSNDVRESAGSFRVKLYGYNYDELSYWTE
RLKEKLLLHRRIKEVTVNSEFSWWKDDYSEFYLDLDKLRMAKENVTATQLFTALRPVFGR
DIYCGNVLFDNQTEQLKLSSLQGQQYDVWGLVNIPFFINGRSYKLADFATVQKGQSPQKV
AKENQQYRLCLQYEYIGSSEQGKKLLKKDLEEFNKVLPMGYTAENDQDYWSWNKKDNKQY
ALLLIVIAIIFFTTAILFNSLKQPLAIIFVIPISYIGVFLTFYLFGLNFDQGGFASFVLL
CGITVNASIYILNEYNAIRKRYPLLLPARAFTKAWNSKILPIFLTVVSTILGFIPFMVGD
GKEAFWFPLAAGTIGGLVMSILGIFLFLPIFSLKKQKR