Protein Info for A4249_RS15205 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: PAS-domain containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1128 transmembrane" amino acids 6 to 29 (24 residues), see Phobius details amino acids 43 to 64 (22 residues), see Phobius details amino acids 75 to 93 (19 residues), see Phobius details amino acids 122 to 140 (19 residues), see Phobius details amino acids 163 to 182 (20 residues), see Phobius details amino acids 203 to 222 (20 residues), see Phobius details amino acids 242 to 261 (20 residues), see Phobius details amino acids 282 to 306 (25 residues), see Phobius details amino acids 329 to 359 (31 residues), see Phobius details amino acids 383 to 402 (20 residues), see Phobius details amino acids 409 to 433 (25 residues), see Phobius details amino acids 440 to 459 (20 residues), see Phobius details amino acids 478 to 497 (20 residues), see Phobius details amino acids 656 to 676 (21 residues), see Phobius details PF13188: PAS_8" amino acids 627 to 673 (47 residues), 21.6 bits, see alignment (E = 4.1e-08) PF12860: PAS_7" amino acids 632 to 744 (113 residues), 123.4 bits, see alignment E=1.3e-39 PF00512: HisKA" amino acids 779 to 845 (67 residues), 39 bits, see alignment 1.7e-13 PF02518: HATPase_c" amino acids 890 to 996 (107 residues), 79.9 bits, see alignment E=4.9e-26

Best Hits

Predicted SEED Role

"Sensory box histidine kinase/response regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A168NTF4 at UniProt or InterPro

Protein Sequence (1128 amino acids)

>A4249_RS15205 PAS-domain containing protein (Brevundimonas sp. GW460-12-10-14-LB2)
MPGSDAPMFSLTILGLVAAYMAVLFAVAWSQERPSARARGKGLGPSVYALSLAIYCTSWT
YYGAVGTAARDGWEYLPIYIGPVIGLTLLFPLWRRIAAAARRENVGSMADFVASRYGKSQ
TLGAAVTVVAILGSLPYIALQLKSLSMAGALLTAGTPVAGSEGLTVLVLAGVLAFFAILF
GARRPDLTEHNRGLIQAIGLESMVKLGALLFVAIFALVLLLNEGSPPRIIEGLGALAAPP
EVTPRFTAITLLSTLAIFCLPRQFHVAFVEGGQPSDVKRARWIFPLYLLLTSLAVLPLVA
AGALFAPSVNPDLLVLALPFQRGETLLTAVVFVGGFSAATAMVIVEAVALSAMVSNSLIL
PFLARERWRVRGDASDMAGTILQVRRGAIVAVLLLAWLYYQATDQSRGLAAMGLVSFAAM
AQLAPALFGAVLWRGGHAQGALAGMTVGMGVWIVMLALPQLSPSAPWHLHVMLGIGDPLA
LGVFVSLALNLAAYVGVSRFAQPRLIDRVQARAFVDRLGPDWMEARPAPSGASVGDLRAL
VARFIGDERAERAFTAWGDETDTKLRDADPADAALARAAERMLAGAIGAASARRVIAAAL
AGVGRAPEDVVRMLDEASQAVQFNRDLLQTTLDNIDQGVIVVDEDLRVTAWNRRYVAMFD
LPAGFVHVGLPIAVIYRLNAERGESPDDIEAWVERRLEALSRRIPHDHERQQPDGRVLRS
SGAPIPGGGYATSYTDITALRQAARELEEANERLEARVADRTARLDEARRMAEDATASKT
RFLAAASHDLLQPLHAARLFIAALKEEPALEDATSRTLAVNADRAIDSAHRLLTALLNLS
KLEAGGVRTNVARLSLGGLFDELRREFAPVAEAKGLNLTVMSSGLWVASDRDLLRSMLQN
LVANAIRYTDAGRVLVGARLRGETVQLFVCDTGRGIPDTEHETVFGEFVRLPGAVDEPGA
GLGLAIVRRLSSLLDHPLELSSHLGRGTTFRITVPRSAADLPAEASPVREARLPLAGLRV
LCVDNEPVILDALNALLTRWGARPTLVASVEAAKAAIGPFDAAVVDLHLGDGPEGFAVID
WLRPQGVRRIALVTADTRDGLNEQAMAAGAVLLPKPIKPAALKAFLSS