Protein Info for A4249_RS15010 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 487 TIGR00229: PAS domain S-box protein" amino acids 4 to 119 (116 residues), 44.7 bits, see alignment E=6.8e-16 PF08448: PAS_4" amino acids 8 to 114 (107 residues), 56.3 bits, see alignment E=9.1e-19 PF00989: PAS" amino acids 10 to 110 (101 residues), 24.1 bits, see alignment E=7.7e-09 PF13426: PAS_9" amino acids 15 to 112 (98 residues), 33.2 bits, see alignment E=1.3e-11 PF08447: PAS_3" amino acids 23 to 106 (84 residues), 40.5 bits, see alignment E=6.9e-14 PF00015: MCPsignal" amino acids 243 to 397 (155 residues), 176.9 bits, see alignment E=8.3e-56

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 62% identity to cak:Caul_1141)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A168NSV2 at UniProt or InterPro

Protein Sequence (487 amino acids)

>A4249_RS15010 methyl-accepting chemotaxis protein (Brevundimonas sp. GW460-12-10-14-LB2)
MLAAVDRSQAVIQFDLDGTVRDANQNFLSVVGYALSDIVGRHHRMFVDPAEAQTPAYAEF
WRRLNAGEFVADKFVRYGRGGKRVVIEASYNPILDAAGRPYKVVKFAMDVTAVEEERERR
AEAERQAAQVQAAVVEGTAKGLSAMAAGDLSYRIQDEFPGDYAVLRDNFNQAMGALDEAV
GVIGVNAGSMQSGAHEISSAAEDLSRRTEQQAASLEETAAALDQITATVRKTAENAQAAD
GVVTQGRSQAETGGAVVQKAVAAMGEIERSSNEISQIIGVIDEIAFQTNLLALNAGVEAA
RAGEAGRGFAVVASEVRALAQRSAESAKEIKTLISASSSQVKDGVVLVRQSGEALTGIAG
RIEEITTLMSEIRASTQEQAVGLAEVNTAVNQMDQVTQQNAAMVEQSTAASLSLSREAAE
LAELVGRFETSQVAAAPSPIHKAPIQQMKARVESFARAHAAPARARMAAGSGGRAAAAAV
QSDWEEF