Protein Info for A4249_RS14860 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: ribosome maturation factor RimM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 175 TIGR02273: 16S rRNA processing protein RimM" amino acids 8 to 165 (158 residues), 124.2 bits, see alignment E=1.8e-40 PF01782: RimM" amino acids 10 to 88 (79 residues), 57.8 bits, see alignment E=1e-19 PF05239: PRC" amino acids 95 to 164 (70 residues), 28.1 bits, see alignment E=1.7e-10

Best Hits

Swiss-Prot: 59% identical to RIMM_CAUSK: Ribosome maturation factor RimM (rimM) from Caulobacter sp. (strain K31)

KEGG orthology group: K02860, 16S rRNA processing protein RimM (inferred from 76% identity to bsb:Bresu_0586)

Predicted SEED Role

"16S rRNA processing protein RimM" in subsystem Ribosome biogenesis bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160I1W5 at UniProt or InterPro

Protein Sequence (175 amino acids)

>A4249_RS14860 ribosome maturation factor RimM (Brevundimonas sp. GW460-12-10-14-LB2)
MTTDSRLILVGQVGGGFGVRGEVRVTAFTADPLALTAYGPLLRADGTVALTLTSTRPDKN
GVVGRAKEITTKEQADALRGLKLHVPRDRFPEPDEDEFYLADLLGVQVRDTAGGVMGTVK
SVQNFGADDMLEIAPAAGGPTWYLPFTKEATPELHLADGWLLAVPPTEVGEREPD