Protein Info for A4249_RS11900 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 956 PF08238: Sel1" amino acids 802 to 838 (37 residues), 29.5 bits, see alignment (E = 4.1e-11) amino acids 840 to 873 (34 residues), 11.5 bits, see alignment (E = 2e-05) amino acids 875 to 911 (37 residues), 30 bits, see alignment (E = 2.8e-11)

Best Hits

Predicted SEED Role

"TPR repeat, SEL1 subfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A168NYK5 at UniProt or InterPro

Protein Sequence (956 amino acids)

>A4249_RS11900 hypothetical protein (Brevundimonas sp. GW460-12-10-14-LB2)
MSAAAPWSVKGIDPKAREVAKDLARRSGMTLGEWLNSMIMEDEEEGYATLPRRSQAAEYE
RRNRSRRLDDAYEVEDSQQRISASIDVIAARLEAAERRSTVAIQGVDQAVAGLMRRLDGQ
EAEAQGAARRIDDIAEELREGHRRLRAFERDTGPSTQEAFGKIETSLGALTGRLYDIEER
QRLGVSDLRERMEAVEKAAGPGVGTEMLAQVSARLDEAQNRTTEALKTLERSFAALDQRM
RTAESRVEPESARDLARFEKLAESLSRQIDNNRAEMMQRLDAAETGARIDRIERAVQAVG
DQLKASEEKGAIGLEAMGREVLRIARNLNARVKKVETDNDGRTEAVARAAADVVSQTIET
EVARRAGRLDQEFARHVDRVDQRLTASDDRHAIALEKLGGEITRISDQLSDRIAQSERRS
QQALEDIGRRLSESSDKIEQRYDRASGELAERMRLSEERTARLLAEARESIDARAPTPIR
DKPLDNEPAWTPARQVLERAASATIQAPIQSASIEGDWRAAAFPDETFTDHDAWSSDPVT
PEVATAAPFPSAPVVQTEAEPVEALADDMPMRQVDPDGVEPIIQPFSGFGGADVEDALEA
TSPGFSTAPAEKRDAAALDADDDDFGGETEFVDPRRLRSSMEAAAAAGRAASTRSTIDAA
RAAITAPAEPEPAPRSGFGLKRGGKSKLQERLDRQASKDGSTVKKAFLASVTAVALTGGV
YGYLSLTDGDAPDFEMPSFGGGSTTNGAMPLAASAVTPTGPKATFDIGGPGAADYEAAIG
KLEAGDNSGLDGMKRAANLGYAPAQTYLGQLYLDGANGVPADPAQSRQWGRRAAEGGDPR
GMHLYGMQLYEGDGGATNQAEALTWLLNAAERGLPDSQYNVARIYETGADGVAKNPTEAL
KWYMIAARGGDAEAQAAVTRLRPTASATAQRAARTAADAFVAQSQGQSQAQTQATG