Protein Info for A4249_RS11015 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 763 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF07715: Plug" amino acids 87 to 180 (94 residues), 39.5 bits, see alignment E=1.1e-13 PF00593: TonB_dep_Rec" amino acids 282 to 662 (381 residues), 94.7 bits, see alignment E=1.8e-30 PF14905: OMP_b-brl_3" amino acids 340 to 742 (403 residues), 269.6 bits, see alignment E=7.8e-84

Best Hits

KEGG orthology group: None (inferred from 71% identity to bsb:Bresu_0278)

Predicted SEED Role

"TonB-dependent receptor, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A168NMT2 at UniProt or InterPro

Protein Sequence (763 amino acids)

>A4249_RS11015 TonB-dependent receptor (Brevundimonas sp. GW460-12-10-14-LB2)
MTSSKLVLMLGAAAVALPGAALAQTQTPSQTPPPATTSQPAAQTPATTAQTPAPRTQTTE
PAQQQQPASVGDVVVNARANDVRTSIDSVSYSLANDLQATTGSLADALRNVPSVDVDPEG
NVSLRGDANVTILVDGRPSGILTGPGRGQALIQLPASQYARIEVMTNPSAAYSPEGSGGV
INLITKPTAPKPGTQTTGSLRVNVGDNGRWNAGLSGSYQKDRLTLSGDASYRSDPTELTF
NRVREQLDPVTGAVVSTTTVEQPVESEQNGAFARFTAEYKLDDKTQLTGELRGVAFDGTG
SGDGLYETRNAAGAVTSAYRRVGDSDFTFNNWGATARVLRRFDGDGHEWSNELRYDSNAN
DTTSQTLTTFLIPAGAALYERTRTAVDQVTWGFTSAYTRPMSDGGKLRLGYELNAQRPEQ
DAEFLRGPSQAALAPVPALNNRFEATQTVHALYTTYERPLGEKLSAQLGLRLEQADIEIK
DLTSGASASQDYFRAYPTAHVQYQLTPEQTLRASYSRRIQRPQPSQLNPFVVYQDPLNVR
SGNPDLEPQETDSFEAMWQMRKGQSFYQATAYLRNTDKAFTDVASDIGGGVFLTRPENLG
SRRDLGVEATANGRLHPTLRYSASVNVFRQEIDSGAVVGGGDREATLASGRLSLNWQPTA
KDFVQVSSFWQGDSLLAQGRREAGGMVNLGYRRKLSEQLSFNFTARDLFNTFNTTTIYET
PQFRERSEQDIKLRAFYIGLTWNFGGPRRQPEQFDFSTGPTGG