Protein Info for A4249_RS10495 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: DUF2170 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 226 transmembrane" amino acids 130 to 149 (20 residues), see Phobius details PF09938: DUF2170" amino acids 87 to 220 (134 residues), 159.8 bits, see alignment E=1.7e-51

Best Hits

KEGG orthology group: K09980, hypothetical protein (inferred from 77% identity to bsb:Bresu_2960)

Predicted SEED Role

"FIG006163: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160I106 at UniProt or InterPro

Protein Sequence (226 amino acids)

>A4249_RS10495 DUF2170 family protein (Brevundimonas sp. GW460-12-10-14-LB2)
MPNDGSPSSTANDRIRAWRQARREAGLVKLELWVPAAARDDVKAAVRAIVTDSTRGPQLA
GRPRRPTSDSIPPGDDHQMDAVIETPWTVPAIKAALDGSTLLRDGEMTLRVVEGAEPVLL
ATMHEYGDLPVYLSVGGAQIVCSVLLWPVSEQKDRHAFNDFLLKAQRVVPLSNFAITNVG
GEDVYELMGELSCKTTLQTILIELRTLAENAIDATELRETFGADAA