Protein Info for A4249_RS09395 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: SMC-Scp complex subunit ScpB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 226 TIGR00281: segregation and condensation protein B" amino acids 15 to 176 (162 residues), 104.8 bits, see alignment E=2.1e-34 PF04079: SMC_ScpB" amino acids 16 to 169 (154 residues), 169.6 bits, see alignment E=2.1e-54

Best Hits

KEGG orthology group: K06024, segregation and condensation protein B (inferred from 83% identity to bsb:Bresu_2985)

Predicted SEED Role

"Segregation and condensation protein B" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160HXZ8 at UniProt or InterPro

Protein Sequence (226 amino acids)

>A4249_RS09395 SMC-Scp complex subunit ScpB (Brevundimonas sp. GW460-12-10-14-LB2)
MSDLSFQPDEAEIERRVEALLFAAAGPLTAAEIAARLPENCNVARAISGLRARYEGRGVE
LECVADRWRFRTAPDLAFMMTQEREEPRRLSKAALETLAIIAYHQPVTRAEIESVRGVSI
SKGTLDLLLEMGFVRLRGRRRTPGRPVTYATTDRFLEHFGLATLYDLPGVQEMKAAGLLD
LSLPVGFEVPDPSRASEADDEDGTLPLDDEAPEFAQDFVGERGGPG