Protein Info for A4249_RS08080 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: DNA-directed RNA polymerase subunit beta'

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1398 PF04997: RNA_pol_Rpb1_1" amino acids 17 to 344 (328 residues), 281.6 bits, see alignment E=2.3e-87 TIGR02386: DNA-directed RNA polymerase, beta' subunit" amino acids 20 to 1027 (1008 residues), 1477.8 bits, see alignment E=0 PF00623: RNA_pol_Rpb1_2" amino acids 346 to 487 (142 residues), 127.6 bits, see alignment E=1.5e-40 PF04983: RNA_pol_Rpb1_3" amino acids 491 to 644 (154 residues), 99.4 bits, see alignment E=5.2e-32 PF05000: RNA_pol_Rpb1_4" amino acids 673 to 759 (87 residues), 66 bits, see alignment 6.7e-22 PF04998: RNA_pol_Rpb1_5" amino acids 762 to 851 (90 residues), 99.1 bits, see alignment 7.6e-32 amino acids 874 to 1309 (436 residues), 139.6 bits, see alignment E=3.5e-44

Best Hits

MetaCyc: 61% identical to RNA polymerase subunit beta' (Escherichia coli K-12 substr. MG1655)
DNA-directed RNA polymerase. [EC: 2.7.7.6]

Predicted SEED Role

"DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6)" in subsystem RNA polymerase bacterial (EC 2.7.7.6)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.6

Use Curated BLAST to search for 2.7.7.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160HYS8 at UniProt or InterPro

Protein Sequence (1398 amino acids)

>A4249_RS08080 DNA-directed RNA polymerase subunit beta' (Brevundimonas sp. GW460-12-10-14-LB2)
MNQEVLNIFNPVPVTPTFDQIKIALASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPTKDYECLCGKYKRMKYKGIICEKCGVEVTLARVRRERMGHIDLAAPVAHIWFLKS
LPSRISLMLDMALKDVERVLYFENYIVTEPGLTPLKQNQLLTEDEFYRYQEEFGDDGFTA
EIGAEAVRNLLMGIDLNAEAEKHRAELADNPSEMKAKKASKRLKLIEAFLESGNKPEWMI
LTIVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVITVG
PELKLHECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPAVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPKLIEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYLSLVKDGEPGEGKLFANIGEIDAALD
AKVVTLHTRIKARWTEQDAEGNEVTKVIDTTPGRMKLAALLPRNPNVGYRLLEKNLTKKE
IGNLIDVVYRHCGQKATVIFADQMMGLGFREAAKAGISFGKDDIVIPAKKVELVAETRTQ
VEEYEQQYADGLITRGEKYNKVVDAWSKATDRIADAMMGEIAQPRVLIEGENPDINSVFM
MANSGARGSQAQMKQLGGMRGLMAKPSGEIIETPITSNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDSIVTEQDCGSTRGITLRAVMEGGDVLVSLGQRILGRYA
AEDIKEPGTDTVLFPADTYLVEEVAEAVEAAGVQSVKVRSALTCEAEAGICAHCYGRDLA
RGTNVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVAETSFMEATNAGTAKVTGPTV
VAAHGDLVAMSRNVIVTVVVDGKDRETHKAPYGARIRVKDGDEVKKNQRLAEWDPYTTPI
LTEVGGVVRFEDLVEGLSVKEETDEATGIAQRVVSDWRASPRGSDLRPAMGVTLGDAYAK
LSSGSDARYLLPVGAVLSVSNGDEVKPGEIIARVPTEGAKTRDITGGLPRVAELFEARRP
KDCAVIAEMDGRVEFGRDYKNKRRIKITPEPNADGVQGEPVEFLIPKGKHISVHDGDLIQ
KGDYIIDGNPDPHDLLRIQGVEALAEYLVNEVQEVYRLQGVPINDKHIEVIVRQMLQKVE
VLDSGETTLIRGDTVEVAEAVLENAKVEKRGGRLATTQPVLLGITKASLQTRSFISAASF
QETTRVLTDASVHGKKDMLEGLKENVIVGRLIPAGTGAYLRSLQKIANERDAELTSALEE
AIEPLPADLQLELESSES