Protein Info for A4249_RS06660 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: TPM domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 225 transmembrane" amino acids 42 to 61 (20 residues), see Phobius details amino acids 84 to 104 (21 residues), see Phobius details

Best Hits

KEGG orthology group: K08988, putative membrane protein (inferred from 52% identity to bsb:Bresu_2285)

Predicted SEED Role

"FIG004694: Hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160HYV2 at UniProt or InterPro

Protein Sequence (225 amino acids)

>A4249_RS06660 TPM domain-containing protein (Brevundimonas sp. GW460-12-10-14-LB2)
MQITDNDRTRIAEAIAAAERQTSGEIFCVVARRVSTYVDVSLAWAAAMALLAPIVFVPFV
LDLRWPSDGWEAAHQAAQEATTAQALGLYALSQAVVFVGVFLLTRIPTVRRLVTPAGVRR
GRVREAALQQFMAQGVHVTQERTGVLIFAAMDEHKVELIADESIYAKVDEDAWAQAVAVL
TRELRADRPVDGFAAAIGLCGEVLTRHFPPRADNRNELPDHLILL