Protein Info for A4249_RS06445 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: autotransporter outer membrane beta-barrel domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1097 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details

Best Hits

Predicted SEED Role

"putative autotransporter protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160HWT4 at UniProt or InterPro

Protein Sequence (1097 amino acids)

>A4249_RS06445 autotransporter outer membrane beta-barrel domain-containing protein (Brevundimonas sp. GW460-12-10-14-LB2)
MRILLATAVAIAPLMVATGSQAEIVISNARTTPIQTSNATGTAADNIRIASGGSVAVASG
AAVTLNSNNTVDLDSGGSITMDKSADGSTGLLVNGGNTGSVIVGGSITVNDTLETADIKD
TDGDGDLDGPFATGTGRYGVRVTGASPFTGNILVEGTGAIAVEGNNSYGLSVESALNGKL
QSLGTVRVTGNDSAAIRTTGPISGNVDLAGSISALGANATGVSIEGDVGGALKIHSSVVA
TGYRYTTPPPVRPTTGTFDNATTLFLDELDADDLLQGGPAVRVGANVASGVLLDKALAYS
EAGIEGDDDKDGVKNGDEDDDGDGIKNRDDPDRDGDGIPDASETAASITSLGGAPALLIG
STTNTVTLGAVGTGDAAYGLINRGTIVGSGLYSGVESRAVQLGVTGGQAVNVVGGVRNEG
GISSTAVDANATGLWIGSGVTAPTINNSGAIQAVASGKQAQSATGILIGAGANVASLTNT
GNLVASFGGNQGSATVIRDQSGSLTQLNNAGSIIGSLSPNTDDTNPVTGKVTAIDVSANT
TGVTLRQYGIPAAAGSTATDTDKDGVPDANEPAIVGAIKLGSGADTVNIENGVVNGDIDF
GAGADRLNISGGAVVTGAIANSDGRLDINVSKGTLAATQTGATAISNLNIGAEGTLLVNL
DPANDRAGGFNVSGNATLATGSTLGVRFSSLIDQPERFNVITAGTLNVGQINQTLLSDNS
PYLYVVQGGVAGNTVYIDARRRTASEAGLIPVEASAYDAVYGALGSNEALRNLFLSQTSR
DGFIDAYEQMLPDHSGGPLMSLSAGVDAVTRALTGRNAAAAPGETSAWVQEINFYADKDK
TDSYGFRSEGFGVAGGVEKGTSLGAVGISAAFTSSDIKDPEAEAEEVLSANLLELGLYWR
AQGQYWTTWARAAGGYASFSADRSLVATGVYLNNKSDWHGWTAAVAGGASYERNFGRLNI
RPEIYGEYFSLSEGSRSEKGGGDGFDLDIDSRDSHIFSAVAAMNVGYGFGRNGWIRPELR
IGYRQNISVDAGETIARFASGGPDFILSPDAIEGGGPILGFRLNFGNELGMLSLTGDAEL
LEDYVRYSLLLRASFRF