Protein Info for A4249_RS06275 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: 30S ribosomal protein S2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 287 TIGR01011: ribosomal protein uS2" amino acids 7 to 226 (220 residues), 314 bits, see alignment E=2.2e-98 PF00318: Ribosomal_S2" amino acids 11 to 225 (215 residues), 313 bits, see alignment E=4.3e-98

Best Hits

Swiss-Prot: 79% identical to RS2_PHEZH: 30S ribosomal protein S2 (rpsB) from Phenylobacterium zucineum (strain HLK1)

KEGG orthology group: K02967, small subunit ribosomal protein S2 (inferred from 88% identity to bsb:Bresu_2500)

MetaCyc: 52% identical to 30S ribosomal subunit protein S2 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"SSU ribosomal protein S2p (SAe)" in subsystem Ribosome SSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160HWJ3 at UniProt or InterPro

Protein Sequence (287 amino acids)

>A4249_RS06275 30S ribosomal protein S2 (Brevundimonas sp. GW460-12-10-14-LB2)
MALPEFSMRTLLEAGAHFGHQTHRWNPKMDRYIFGSRSNIHIIDLSQTMPLFHQALVAVR
EVAAKGGRVLFVGTKRQAAEPVAEAAKRCAQYYMNNRWLGGTLTNWRTVSGSIARLRELE
GILENGGEGRVKKELLNLQREKDKLELSLGGIKDMGSIPDIMFVIDTNKEAIAIQEARKL
NIPIIAILDTNSDPDGITYPVPGNDDAARAIQTYCDLIADAVLDGLAAGASASGIDLGAS
EAPVEPMLREASAPKAEAEAAPAGTEGAAAELEAAAEPAAETEKAEG