Protein Info for UW163_RS23925 in Ralstonia solanacearum UW163

Annotation: amino acid-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 382 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF13458: Peripla_BP_6" amino acids 27 to 353 (327 residues), 147.7 bits, see alignment E=1.1e-46 PF01094: ANF_receptor" amino acids 47 to 296 (250 residues), 41.1 bits, see alignment E=1.8e-14

Best Hits

KEGG orthology group: None (inferred from 65% identity to rso:RS00418)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (382 amino acids)

>UW163_RS23925 amino acid-binding protein (Ralstonia solanacearum UW163)
MMPLKRIAALVAIAAAFITGQAGADVINVAQVLPFEGSVETSTRATAEAAELYLRRVNAA
GGVNGHIINVVTVNGSSNLETAARRTAEVIRQHRPVALLNYYGSARTEILINNGILDATR
TPVIGANVSSTKVRQNPGNQWVFYLRAGLRDEAERMVRQSMSLGGKRVAVLYQGDAFGED
GLSQSMAVLRRLGIKPLVMLPLETRMMDAPMLNKIAETVLKADIDVVLMFSDSVNVGGFL
RAYRERGGTALVATDSTSSADEVVRASSADLARGVCIAEVMPAIEKRNTSLTRAFTADMA
AGGRADLASSTTALEGYASARLFVEVLRRVPGPVTGEAIRTALQTRGPYDLGGFELRYGP
AQYEGSQFVDIGIIGRNGRVLN