Protein Info for UW163_RS22180 in Ralstonia solanacearum UW163
Annotation: Type III effector protein (Skwp 4)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.
Best Hits
Predicted SEED Role
"FIG00974765: hypothetical protein"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (3024 amino acids)
>UW163_RS22180 Type III effector protein (Skwp 4) (Ralstonia solanacearum UW163) MQGQPSTSKRKRGFAALTDTRTASRRRFGSASAPHGRQALKPRVESGREPAREQMIDYGK WLDHTALAQLDEQRLDQCKSLRNLVTHARAQKVAPESCIALARTNVLAQQNGYGLALVFL DAAVPPEENTRRLDGYLLALSAASFRAHPKIRQDLLDCVDMAACYLTKTAWFESAPLHQL ANLANLLSKYSNRSACAQAVAWIAGQVLQAGQSLQLTAKLLALLTNAFSKHPASRPCEQA VAHIGRHVLDKPVQDWPPQSIGLLLNAFSKWPGNADCTIAAEYLVTWLCQPDSQLQALDA RGIATVLNAVSKWPGSTTCRKAAKLLATRLSSDTSLLQALDAQGVANTLNGLCKWPEAKV CQATAEHVATRLAKDVKLQQAMNALEVANALNALSKWPDARVCRVAAEHLAARLGQDAKL LQSMEVQHCASALNALSKWPDSTDCETAAEHLAARLGQDDRLRQAMDGQEVATVLNAVCK WPEKDACRTLAKHLAMQLVEDADLQKAMTAQHVANTLNALSKWPENRACLTAAEHLAVWL THDADLQQAMNALEIATTLSALSKWPDSRACRTAAEHLAAHLAREAGIRQAMDAQGISNA LNALSKWPDSGACRKAAESLAVRLGKDVKLQQAMNALEVANALNALSKWPESGACRTAAE HLAARLTNEAGMRKALDARGIANVLNALSKWPDADACRTAAEHLSVRLEQDDRLRRAMDA QQMANALSALSKWPEVRVCRAAAERLAERLAQDGRLRQDMTAQHVASALNALSKQPQAEA CRTAAEQLAVRLGKDADLRQAMNERELANALNALSKWPESRACRTAAERLAERLAQDDQL RQAMTAQHVANALNALSKWPQAEACRTAAEHLAARLAQDGRLRQAMNAQGISSTLNALSK WPDANACRTAVERLAERLTQDEPLRNALDGQGVSNTLNALSKWPDAGACRAAAEDLAARL VEDAALRRTMTAQHVANALGALGKWPDAGICRTAVEHLAARLAEDVELQQAMDVKGITSA LNTLSKRPESAPCRTAAEHLTVRLGGDADLRQAMTDQQVATTLNALSKWPDASAFRTAAE QLAQRLACDDRLRQTMDAQGVANTLNALGKWPEASACRAAAEHMAARLARDASLQQAMNT QAIASALSALSKWPENESCQEAAVSLAAALGIGGRPFATFSMGELGQLANGMGRFSLVMG GLMAGEDPGTPDASPLGLMHARLRELAAHLNVRHGGLDTADTLDVAIIFKALASARLKDC LKLLAPQGLQRLRNLHVQTQFKRDNLETLGNLAAGLLPLVRSPELKTFRADTLRLLERIQ PDVACKAQSYIETHVAPAASAPGDRIAENEAFGTRRPGLTFFLVLKTYDVVAGLWKMRNV ADDRARVTSRREELKAWVGNLLEQVRESVEGDLDEMSWNLIAQIEAGDHVLDTLDLKLWR DLDKIIAKHPPTRLDVAAVRRELRSLPEVRDLMRNQSGAATLQIIDIRGRNIRAGADGTA PAQYSFFTRLTGGQIPLIEVELPGKLGAFMLARTIHRDGDLLRMDLFGGSHLTPPTTRVF EQLAGARSAKRYGRIPAIRLADTAPHAPLMRDVIRKLNPQREDWYRMQRALLEVVPRDHV VEGPVRLALLADRRQGAEPAFALRTPAGEPIQLVSHDGCGFIKESLARRIPAMAQAMDAW RPSHQKKAPDQAPTLRMSPLPAQATHHYPRDEAVIEEAREHLRQSLHTDTALWETDASGG ARKFSKAKLYDLLTCAGITGVQGIAVPSADDRLYLPGETGGPFDRAGGPVLLGKPPYDKP NLIPVPAERVGTSKQGDATARFLETAFAFQYSYTAWDESRTAAIGDADDAPMLHGKGVTI VVPDALWPQDNDAQWVWSTEDMKVHSSWTQRRERDRLPAHMDTVGSLRLKDIFAPGALIA VPIDELKKRDADCDGDKVFVYAGLPKMAQAISTFFEDRERQVGKAPSFKPPKTASTAFDA AGRYQAGRAAEVLSAVGGQDLVRRMSTLQFHFWGQPQALRERIAEYAIFGTYEGTRRELR RGLSRLLYNPAEATSAQLQELRERARLGEQYALHPVARDAAEALRSQLEAFANDLQNTRD DAAQPQALSPALAQRFTALADAYAQAHTPRERLAALLEHYPSALLPHPGTTLPKERPSGT DPTPKPPLGYEPGAPLETLRNLLTLGVKVGTDAPKAVTQTDVYLKVADRLDRALRNEPDR IRSIPYTKSGLLPKLRDGLDAEAELKRLHDNPTLSAGLMEMALKALQEHGLIEAAPAPGD VSTDIEARLRQLARSLHSAAAHAEAHVTNVVRNAIHGIGVLRGDANRLKSEPSLFDKLCK LMQKERLTPDEAAAGVHDALRYSIVQPLETFAQGYTDILGRLDIHGVTRVRVRNSFVKPH AAFKGINVGLMGRDADGKTVRLEIQFHTPQTFDLKERFHDDYKRAQSLSLAGASYEQQKT LLAKARDGFDATSMPAGCERIIDWDSEPPLTHRLRAATTAAHTDPKGPIERIATQARTVQ REVGPLLETIGLAIVKHHSVPKQAASIGKKIQRYQVLKGLSPDLAEARIRDAMRWVVLLP VERFAAEFEQTRQALEEAGLRVMRINNGFVAADTTYAGLNATLRTAGGLDFEMQFHTVDS LRTRNTSHKAYRKLQDQEVDAMLERDPGKRLSLQQSNAQLLLELKERAAEVPRPQGVVDI ASFNRYPDANAGEGPFNKPQRAQGHPSAERKPAIAPQPHPTLSQGRRSSMPTLDVKVEAE VKAEVEVAGNPILQEIAASLAPQWIALRQELAGTGIAPGPMQPARLGEQLTAIQRGLEHK TLQDLLDLADNPGLRLDWARREPLYEAVVVAAASLGLATQGREHPLYDALRELDVRGGLR QSDIDRRFRVGVASGERNICLFDSLHQLIMHSGNGMQRLQGLLADARIDSGAAFGRYMQH LMHRGGLLRASPAGHFDQMDFSATSVVMTALANLLDLRIVFLHRQADGTVHLSPPVGNSG AHTVFLQRETIGGADGHFRPLWLA