Protein Info for UW163_RS22060 in Ralstonia solanacearum UW163

Annotation: endoribonuclease L-PSP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 125 transmembrane" amino acids 58 to 78 (21 residues), see Phobius details TIGR00004: reactive intermediate/imine deaminase" amino acids 1 to 122 (122 residues), 138.5 bits, see alignment E=6.7e-45 PF01042: Ribonuc_L-PSP" amino acids 7 to 122 (116 residues), 114.4 bits, see alignment E=1.6e-37

Best Hits

Swiss-Prot: 48% identical to RIDA_BACSU: 2-iminobutanoate/2-iminopropanoate deaminase (yabJ) from Bacillus subtilis (strain 168)

KEGG orthology group: K07567, TdcF protein (inferred from 55% identity to bts:Btus_0067)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (125 amino acids)

>UW163_RS22060 endoribonuclease L-PSP (Ralstonia solanacearum UW163)
MQVISTSEAPRAIGPYSQAVASDGGIFTSGQTPLAVNDASVCGSIKEQTEQVFNNLEAIL
MEAGISLAGVVAVTVFMTDLGEFSDMNVVFARRFGPHRPARTTVQVFALPTGAGVEINAI
ARRQA