Protein Info for UW163_RS21590 in Ralstonia solanacearum UW163
Annotation: type III effector protein skwp2
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.
Best Hits
Predicted SEED Role
"FIG00974765: hypothetical protein"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (2519 amino acids)
>UW163_RS21590 type III effector protein skwp2 (Ralstonia solanacearum UW163) MKRIDSASRHSPWSNDRREPASSTRTDKHDRFPTPDTPTPFDGLPRRTDKRHHPEHEPAP KRQRVSLARKLEAASHPPHGVGVSRDRSSHPQHRAHMPAGGPRRQRPDRDWPARQPKRAR HDRRDDAVPAAVRRDSTKPVPTQDHRDRHHRPEAPRRAASPVPRRPSSDAQAAFRKQHAR ARALDNRESDLLWNVANNAVPRHDIGKALRLLERPAADFADDLACFANFVRAVSTLLESA GKLGLPDHAIDRITRKWEESSQAFYSVHHDMKVDNERWVSKLASLCNRWSQTQPVQGAGC VAVARILETLGNRYGPDLLHNRLRNNNPLLGRDVSLLINAFSKWPEDEACRMGVQLLAGV VAREKEALLSPVEYQPQALARIFNGVSKWPDDPHCKQAAEMLAEALWQRREELVDAQDFK PQELAMCLNGLSKFTSDACERAAIAAADAVIWRHAELRDPKAFTPQNLSMVLNGLSKWPH REPARLAAAEVADALWHRRREMTDTGQFNAQDVSNCLNGLSKWPAEARCRKAATALAEAL PLHRDAHGDLPHFLPIHLSNCLNGLSKWPEEESCRRAAITLAGALLQRQDDLSDPEQFSA QHLSNALHGLSKWPEEDTCRKAALAVAGAVAQRLETPAGGDAFTPQQLSNCISGARKWPE EPPCRLAAAALAATLLRRQHALCDPDQFTVQALSNCLNGLSKWPGEDTCRKAALAVVGAL KQRWSTLDTSDPFLPLLLSACLNGVSKWPEEDLCRQAALMVVETLLQHRGALADPRQFTP QQLSNCLNGMSKWAEMPRCREAALALAEALLLRREELSTIEQFGAIGLAACLNGLSRWSE EELCRKAALAVAGALLQGWDALSASGQLTPRHLANSLNGVSRWLQDEAARGVATRIIGVL GSGGQPFGTFTMAQLAQLANGTARFIRDLDHACEAADVDAIQGEASVEWAQARLRELAAH LDSRPDRLAQADTRNVALIFKVLANTQLYDGLRLLAHQGLTRLATLYGDTAFRTDNLEAL ASLAAGLLPVTRAPELKDYRADALRLLERIHPAVDRKIRLYLDARLASADPRQPAAAKVP LSLRIRRDGEAFGTRRPGLSFFLLLKAYAVVAERWRRHHVPDIPSPAQTRREALKAWVAQ ILERTRDVIETDLDEMSWNLIAQIEAGDQLLDAVDLKLHRDLDRIIAAHPPTPLDVGAVR RELRGLSAVRDVMDSDAGAAAIEFIDLSGRDIAPRQTDASRDAAASQYAFFTRLTGGRLP LLEVQLPAKPSTFMLTRVIQRGGDLLRMDLFGGSHLKPTKARLSDLLRGDGAKHETKRYG RIPAVRLADTAPDAALMKDVIRKLNPQREDWFRMQRALLEVVPRDHVVEGPIRLALLPDR LQGSAPAFALRTPEGDAIKLVSDDGCGFIRESLACRIPVIRQAMRRRAALAGESQRMSLL PPQATHHFPRDADAIEEVREHLRASLRDDPELWADHPDGTRAIKTHQLYDALAGALIMGT QGTAVPSGDDKVYLPRDKSKVFDVKGGPVLLGKAPYDKANLMPVAAERIRTCQQGDATAL FLDNAFAFQYSYTAWDESGSHATGDDDAPMLHGKGVTIVVPDAMWPQDNDAQWVWSTEDM KVHSTWTEGRRRDRLAPRMDTVGSLRVKEVFPPGSLIALPISELRKRDADCDGDKVFLYA GLPKMAQAVTRFLDDRERRIGKLGSFKPPKTAHGVLDAEGRYQAGRTAEVLSALRGQELV GRFSSLQFLFFGQPPALQAALAEHALFGTYEGTERELRHGIRALLQDPREATAQQLEDLL HRADIGVRCAAHPVALEVARALRAQLQAIMRETQAAPGTSSPVLSPTSSPTAPPPHRDTL SDALAALFPPLAQAYEAAATPHERLTALVTHYPRARLPHPDTALPDGRPDRPGNAPGGQS GYVPGAPLETLHNLLTLGVKIGTDAPKAVTQTDLFIEVANHLDGVLGSRPDRIRIMPYTK AGVVQELRHGRFHAQANLQRLQHNPTLSAGLMEMAIQELLAHGAIEGTPQLLATPRETEA RISHCARTLHAAAQLAEPRMTSTIEAAIGGIGILRGRENRIKAEGALRQKLRVLMHKGHE TPEDAAAAMNDTLRYSVVLKPDAFAAGYADIMGNLDRAGLVKTRVQNAFKPGWETFKGIN VKFIGRDAEGQSVRLEVQFHTDETFDLKTRYHDSYKQDFQLQMEGASMEQRLACLAEARK ACKNVVTPAGCERIEHWRSDPPQVNKRRAAPQAARLPGAGAGKRDDAVAAHIERLQREAG RIEREVGPLLSKLQLQVIEQHSVAKKAKSIEKKIRRVSLMNGIPLEQAADRVRDAMRWVV RLPHGTFGAQAREALEALKANGLRITRVNNGFAEKDRTYAGLNVKLQTWQGLDFEIQFHT ADSLYTKQRTHKIYRQWQDQEVERTQASDPARQQALQQANAERLATLRTYAATVPTPVGA EAIPSFDDAPRRPPRQSLPGEPSAGRHPREVPASARDAASAASASTRPSAQRADVALNT