Protein Info for UW163_RS21535 in Ralstonia solanacearum UW163

Annotation: DUF350 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 129 transmembrane" amino acids 6 to 29 (24 residues), see Phobius details amino acids 42 to 64 (23 residues), see Phobius details amino acids 73 to 94 (22 residues), see Phobius details amino acids 107 to 126 (20 residues), see Phobius details PF03994: DUF350" amino acids 13 to 64 (52 residues), 49.6 bits, see alignment E=1.6e-17 amino acids 76 to 128 (53 residues), 45.3 bits, see alignment E=3.7e-16

Best Hits

KEGG orthology group: K08989, putative membrane protein (inferred from 97% identity to rsl:RPSI07_mp1332)

Predicted SEED Role

"surface protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (129 amino acids)

>UW163_RS21535 DUF350 domain-containing protein (Ralstonia solanacearum UW163)
MIAPVLAYATHLLAGAVVFAGFFFVYLKLTPYDEFKLIREGNTAAALSLAGALLGFVLTI
ASSIQHSDGLVPFLFWAVMASVVQLVVFLVLTRLMPDYRVQIEHNNTAAGGLFGVSALAV
GIINAACLS