Protein Info for UW163_RS20960 in Ralstonia solanacearum UW163

Annotation: RidA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 128 PF01042: Ribonuc_L-PSP" amino acids 20 to 125 (106 residues), 82.6 bits, see alignment E=1.2e-27

Best Hits

Swiss-Prot: 38% identical to RIDA_BACSU: 2-iminobutanoate/2-iminopropanoate deaminase (yabJ) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 94% identity to rso:RS03132)

Predicted SEED Role

"Bona fide RidA/YjgF/TdcF/RutC subgroup"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (128 amino acids)

>UW163_RS20960 RidA family protein (Ralstonia solanacearum UW163)
MTITRIGVEGGTGTGGQHLPFARAAGADGWLFVSGQTPMVGGEVVGHGIVEQTRQTLTNL
LAILAEAGYGPEHVVRCGVWLDDPRDFPSFNKVFKDVFGAHPPARSCVVSSMVIDCKVEV
DCVAYKKP