Protein Info for UW163_RS20215 in Ralstonia solanacearum UW163

Annotation: FAD-binding oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 PF01266: DAO" amino acids 26 to 386 (361 residues), 241.6 bits, see alignment E=8.6e-75 PF07992: Pyr_redox_2" amino acids 26 to 239 (214 residues), 28.4 bits, see alignment E=5.1e-10 PF00070: Pyr_redox" amino acids 27 to 59 (33 residues), 22.1 bits, see alignment (E = 7.9e-08) PF13450: NAD_binding_8" amino acids 29 to 80 (52 residues), 31.5 bits, see alignment 8.2e-11

Best Hits

KEGG orthology group: None (inferred from 96% identity to rsl:RPSI07_mp1037)

Predicted SEED Role

"Opine oxidase subunit B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (430 amino acids)

>UW163_RS20215 FAD-binding oxidoreductase (Ralstonia solanacearum UW163)
MKLDSYWNDSVPALALAVHDLPAQVDVAIVGGGFTGLSAALALARRGASVVVLEAGPIVA
PEASGRNGGHVNNGLAVDYAELAAKVGVERARNWYRAYDDAVDTVQRIVRDEAIACDFLR
NGKLKLATKAHQLDALRRSADRLIADGVDIDVEILDAARVRAEVQSERFHGGLLYKRSGH
MHMGRFAQGLALAAQRRGAQIHTGTCVQRIEHVQGQVHRLHTARGTVQAGQVLLATGASR
HGGYGSFGWLRRRIVPIGSFIVTTEPLGAERADALLAGRRTYVTVANIHHYFRLTPDHRL
VFGGRARFAVSSPQQDAASGEILRAGLAETFPQLGEVRLDYCWGGLVDMTQDRLPHAGER
DGLFYSMGYSGHGTQMSVHMGERMAAVMAGDAAANPWRDRDAWRAIPGHLGPPWFLPAVG
MYYQLKDRFT