Protein Info for UW163_RS20130 in Ralstonia solanacearum UW163

Annotation: polyketide synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3244 PF00109: ketoacyl-synt" amino acids 27 to 275 (249 residues), 238.2 bits, see alignment 9.4e-74 PF00108: Thiolase_N" amino acids 166 to 224 (59 residues), 27.2 bits, see alignment (E = 2.1e-09) PF02801: Ketoacyl-synt_C" amino acids 284 to 400 (117 residues), 132 bits, see alignment (E = 8.7e-42) PF16197: KAsynt_C_assoc" amino acids 403 to 515 (113 residues), 52.4 bits, see alignment (E = 5.3e-17) PF00698: Acyl_transf_1" amino acids 551 to 846 (296 residues), 176.5 bits, see alignment E=8.2e-55 PF13489: Methyltransf_23" amino acids 1096 to 1217 (122 residues), 42.4 bits, see alignment (E = 4.9e-14) amino acids 2635 to 2804 (170 residues), 36 bits, see alignment 4.5e-12 PF01209: Ubie_methyltran" amino acids 1102 to 1218 (117 residues), 20.1 bits, see alignment (E = 2.9e-07) amino acids 2643 to 2757 (115 residues), 23 bits, see alignment (E = 3.7e-08) PF13649: Methyltransf_25" amino acids 1107 to 1207 (101 residues), 40.4 bits, see alignment (E = 3.2e-13) amino acids 2649 to 2748 (100 residues), 32.8 bits, see alignment (E = 7.6e-11) PF08242: Methyltransf_12" amino acids 1108 to 1209 (102 residues), 68.9 bits, see alignment (E = 4.1e-22) amino acids 2650 to 2750 (101 residues), 61.6 bits, see alignment (E = 7.7e-20) PF08241: Methyltransf_11" amino acids 1108 to 1210 (103 residues), 35.1 bits, see alignment (E = 1.4e-11) amino acids 2650 to 2751 (102 residues), 33 bits, see alignment (E = 6.4e-11) PF08659: KR" amino acids 1585 to 1760 (176 residues), 130.7 bits, see alignment 4.6e-41 PF00550: PP-binding" amino acids 1865 to 1931 (67 residues), 42.2 bits, see alignment (E = 6.2e-14) amino acids 2906 to 2966 (61 residues), 31.4 bits, see alignment (E = 1.5e-10) PF00668: Condensation" amino acids 1961 to 2296 (336 residues), 123.8 bits, see alignment E=6.5e-39 PF00975: Thioesterase" amino acids 2994 to 3083 (90 residues), 61.9 bits, see alignment (E = 8.4e-20)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (3244 amino acids)

>UW163_RS20130 polyketide synthase (Ralstonia solanacearum UW163)
MDKTTSSAPPAADLDALLAAHYPDCAPIAVIGHACRFPEADDSDAFWHNLLAGKACSQRF
TRQALLDAGLDAATIDAPNFVNVGTVVRDADAFDATLFGYSRQEAESIDPQQRLFLQIVW
HALEHAGHAPRSVPHRTGVFGSARVSTYPGKAPLRIAEVAQVKGLQSLMGNDKDYIATRV
AYKLNLRGPALAVQTACSSSLVAVHLACESLRAGECDMAVAGGAAVSFPQQAGYLHQPGM
IFSPDGCCRPFDADAQGTFAGNGVGAVVLRRLGDALRDGDPVVAVLLGSAVNNDGDRKVG
YTAPSATGQRDAIRDALMLAGIDSTQVGLIEAHGTGTPLGDPIELEALRGVFHPADAGPR
CALGSVKSNLGHLDTAAGIASLLKAVLAVERRAIPPSPHFARPNPALGLDDSPFYVPTEA
QPWNDASRVAGVSSFGIGGTNCHVVVASLPDALRAAVDAGNPTPPEAGAALLLSAASPAA
LQRLALAYADALRQGPARDLLHTALHGRQLDLPYRLAVPFNEETTAALDAFAAGEDDALV
HRGEGEPGQLVWLFTGQGSHWPGMGQALYRQSPAFAACLDRCFAACDGELEVPLREAMFG
ERADLLERMEYAQPAIVAFELAMAAHWRALGLEPHLVIGHSVGEYAAAVVAGHYEIEQVM
PLVRLRGALMQRCAGGAMLAAFAGADALAPLAERFGVDVAAYNGERHLVLSGRHDAIDAL
AAELAARNVRHARLTVAGAAHSALLDPVLDAFGRAAARLHAVPGKLPLISSLLGGTLDAE
RLNAGDYWRRHMREPVRYANALREALARGANVFVELGPDAQLTGIGLREAPGRARWIASA
RRQQPALAQTRQALLELYAAGIALRWERVLPSSGRKLHAPRYPFDTERYWREAEPMTPTL
PTPSTAHRDADAALAEGRRVAASAAASLDLPRLMRLYDCVTQLHAIYVDTLVRRCIGARF
EQGATALDILRAGRLLPRHRQLLVRLLNACAEDGYYRRDGDLYAPAPALAVPHAERDALL
RILRDCCEGFDAIADTVARAGDSLYAMMRGDVEPVAVIFPDSASSGVEVLYQDFSFGRYF
NQIAAGVVTGLVRERRAGPRRHRPLRILEVGGGTGGTTAWLLPELDGEPNVRYDFTDISP
IFTRRAEQKFAGRDYLGYRVFDLQKDARAQGFEAGGYDLIVAANVIHATQHVGRTLANLA
PLLKPGGRLLMREITRPMRLFDFVFGPLVLPLHDEAARGGELFLSTARWKAHCIAAGFER
VDWLPDDDAPTSGISEHIVLATAPGRAATVAPWFAEDADPLLGHTLTDDGVYLADWSDCA
GQHATWQQRLAQSCAELARRHGNGRAVPPLQAQETAPAWLSVVRLRWCGTPLGAARIALD
ARDGAGAWRPLAVTPAGDGLPAPVPAHGTHYHWHWQAVPGATPNADEIALHAASASLAGV
LHDAGLPIAPHAGPRLLVLDAGIQSPHAVGATLLAALSEADRAPLVVVTRGAWRIDADDR
VAPAHRAAWGLLRVAAVEQPERKLAAIDLPPSADWHELMPALAALRNDARWLAVRGGHTL
AQTLTAEPYAAPALPPGSFADARWHIVTGAFGGLGRLSVRWLARQGARRIALVAPRAPAD
WPAFQGEVEAQSTCELRWVNCDAADPSQLNAALQALHADGGVAGAVHAAGRLDDAPLAAL
DTGRIAPVLALKADAAQHLRDWLHAHGGRYLLLYSSAAAALGAPGQGAHALASAYLDGLA
EAQASAEAPTVISVAWGAWGDAGRAADAALQDKLAATGMGTLSSAEGLWHLEQAVMRGAP
YRLAMRVLPERLDAQRRALFDDAAASSRIAGPAEPAALAGPVSTQAAAQSADRVDPHDPD
AVGRWLAARIVAQLKLDDPPRLTPQQDLLRLGLDSLLFLELRSAIESQLGVKLDAERAYR
DMTLAGIARLIAESAPADTDASGPGSAVLVHDAATRFEPFPLTPIQHAYWIGRTDLIDYG
GVACHVLFEWDLRHDTFDLARLEAAWNALVARHDMLRMVIDADGRQRILRDVPVYRPQRR
DLKSLGTDEQARALEHTREAMSYRVLPADRWPLFELVVSELDDTRYRLHMNLDLLLFDVQ
SFKVMMDDLAGAYRGDTLAPLQITFRDYVLAEQARRDEAGWQASWHYWQRTLPHLPPAPA
LPLEPARASHAQPRFTTYQARLARADWDTLKRAWQRWGATPSAALLALFAQTLERWSRHP
DFTLNLTFFNRRPDHPQVAQLIGDFTSVLLIDFALGRAPTLRQTIETTQERLWQRLAHSQ
VNGVELMRELSRGRAHDPGRPLMPVVFTSMLGMSLDGLGIDQAMTSLFGDPVHVFTQTPQ
VWLDHQVMEVDGDLVFSWYCMDDVLAPGAAQAMFDDYRCLLRGVAAQPERMTQPGLTTLR
DDGTWRDFGWHRWPLRADGPEIDLREIEQALRAHDGVGDAIALPGEGGDSLDIAVAAADA
RAVPSPAEAPLSLASPLPMPDAAQLAEIDATWRWLEARALYGIARTLRRHGLFAQTGQRH
DLDEVQAGLATLPQYRRLVRQWLLALTGRGWLRRDGEAFVAVRALDEVPEPAEALPTAGW
SRALGTYLDTCIARHDALFDGTQAPLALLFDDEAVTRALYSDNPAIDCLNRSAAQIAHAL
GEQASGLQVLEVGAGTAATTRHLVPALDGRLQAYRFTDVSTLFLDEARARFAGHAALDYA
LLDINAPVDFDAHPEAGYDLVVAVNVLHDARDVVRSLRRLGQVLKPGGRLMMIEATERDS
ALQMASIGFIEGLNGYDDFRTADDQPMLDLPAWRDALEQAGFSMERAWPEAECSPLRQHL
VLARATRTGRLDLRALERDLRARCGDALPPVRLRQCERIDRYANHDGGPRADASHIDDAA
TPSIAPVASLAPSCSPEEQAALECKVGAVWQALLKCPVDRDSDFFQCGGDSLIATRMIAR
LNRDGLRGASLQALFAQPRLGAFCATLHAPPAPDADADAGDCIVPLAHGRDPAHVFVFHA
SDGELAAYLPLARHLDCRVHGLRAAGTPLPSSLDALAARYVQAVRATQAHGPYTLIGWSY
GTFVAAEAARVLHADGETVELVLLDPVCRADFDVDPADRASLLRLLAQGRVAVPLPAQFE
ALGADEQTACFVRAAQTAGLLPAGASLDDAQRWLQRIGDLLGLLVRHHAPAPLPIRCLWV
SAARRPDRWRPAELDWQGWEAHAERHTLDTDHWALVLDDARAQRIAGLFRQWRDHHHRPQ
EKVA