Protein Info for UW163_RS19985 in Ralstonia solanacearum UW163

Annotation: DegT/DnrJ/EryC1/StrS aminotransferase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 395 PF00155: Aminotran_1_2" amino acids 13 to 128 (116 residues), 26.6 bits, see alignment E=5.3e-10 PF01041: DegT_DnrJ_EryC1" amino acids 14 to 380 (367 residues), 325.8 bits, see alignment E=6.1e-101 PF01212: Beta_elim_lyase" amino acids 31 to 287 (257 residues), 30.8 bits, see alignment E=2.9e-11

Best Hits

KEGG orthology group: None (inferred from 95% identity to rsl:RPSI07_mp1000)

Predicted SEED Role

"Lipopolysaccharide biosynthesis protein RffA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (395 amino acids)

>UW163_RS19985 DegT/DnrJ/EryC1/StrS aminotransferase family protein (Ralstonia solanacearum UW163)
MLDTGFSPWPSFTPEEIAAAGAVLASNRVNYWTGNVCRAFEREFAAWLGVPHAVALANGT
LALDVALKALDIGPGDEVVVTSRTFLASASSIVLAGATPIFADVDPDSQNITADTIRAVL
TPRTKAVICVHLAGWPCDMDPIMALARKHGLAVIEDCAQAHGAVYKGRAVGTIGDIGAWS
FCQDKIMTTGGEGGMVTTNRRDLWERMWSYKDHGKSWEAVYERKHPVGFRWVHESFGTNW
RMLEMQAAIGRIQLTRMPEWSRRRQANASVLAQALSTCASVRVPRPSSDITHAWYKFYAF
VDPQQLAPGWTRDRILAEINAAGVPCYAGTCSEVYLEKAFEPTGWRPERRLPVAQRLGET
SLMWLVHPTLTEAEMARMAEVSRAVLTMAARRAAA