Protein Info for UW163_RS19605 in Ralstonia solanacearum UW163

Annotation: YscQ/HrcQ family type III secretion apparatus protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 356 TIGR02551: type III secretion apparatus protein, YscQ/HrcQ family" amino acids 49 to 348 (300 residues), 189.6 bits, see alignment E=6.3e-60 PF01052: FliMN_C" amino acids 280 to 349 (70 residues), 44.9 bits, see alignment E=4.5e-16

Best Hits

KEGG orthology group: K03225, type III secretion protein SctQ (inferred from 88% identity to rsl:RPSI07_mp0807)

Predicted SEED Role

"Type III secretion inner membrane protein (YscQ,homologous to flagellar export components)" in subsystem Type III secretion systems, extended

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (356 amino acids)

>UW163_RS19605 YscQ/HrcQ family type III secretion apparatus protein (Ralstonia solanacearum UW163)
MNAGPSFSALEPHLRAFTPAQAALTRLLDGMHRCGDSDDWQLQPVRTPLKAAAPITLSIE
SAQCHAELIIDGSHYPALHAIARDTDRPRRLALGNLWLGPVLEALEDAGLGDAQLTNLRR
LKADAVGPATGPVLPLQIANAAHACRCEIRALTWHVAPPAPPAADPAAILDRFSALALPG
RLRVASRRCRRDMLDTLAPGDILLGWNGATYRPATDEGTVRLAWGDARQPHLTATAHYKD
GIVTTLDLPPITDDDDTFMDDFAVAPRMPAGNGADGGVPLEQLEVPVHLELAVMGMPLAE
LAALQPQHVLTLPVKIRDVTVRLVCHGQTLGHGQLVAVGEQLGLQIASIGKHHAER